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  5. LOC_Os03g15930.2

LOC_Os03g15930.2 (LOC_Os03g15930)


Aliases : LOC_Os03g15930

Description : deubiquitinase (OTU3-4)


Gene families : OG0007365 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007365_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g15930.2

Target Alias Description ECC score Gene Family Method Actions
AT2G38025 No alias Cysteine proteinases superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01034018001 No alias OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
MA_99324g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp5g10040.1 No alias deubiquitinase (OTU3-4) 0.02 OrthoFinder output from all 47 species
Ore_g16747 No alias deubiquitinase *(OTU3-4) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29418 No alias deubiquitinase *(OTU3-4) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g25497 No alias deubiquitinase *(OTU3-4) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001172_P001 Zm00001e001172 deubiquitinase (OTU3-4) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003323 OTU_dom 76 220
No external refs found!