LOC_Os03g11120.1 (OVA1, LOC_Os03g11120)

Aliases : OVA1, LOC_Os03g11120

Description : methionine-tRNA ligase

Gene families : OG0004238 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004238_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g11120.1

Target	Alias	Description	ECC score	Gene Family Method
AT3G55400	OVA1	methionyl-tRNA synthetase / methionine--tRNA ligase /...	0.03	OrthoFinder output from all 47 species
Aop_g12932	OVA1	methionine-tRNA ligase & original description: none	0.06	OrthoFinder output from all 47 species
Ceric.28G028400.1	OVA1, Ceric.28G028400	methionine-tRNA ligase & original description:...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020675.1	OVA1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.03	OrthoFinder output from all 47 species
Cre12.g487100	OVA1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.04	OrthoFinder output from all 47 species
Dde_g07108	OVA1	methionine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01016575001	OVA1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.13	OrthoFinder output from all 47 species
Gb_24980	OVA1	Methionine--tRNA ligase, chloroplastic/mitochondrial...	0.09	OrthoFinder output from all 47 species
Len_g18280	OVA1	methionine-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g07353	OVA1	methionine-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Mp2g16770.1	OVA1	methionine-tRNA ligase	0.07	OrthoFinder output from all 47 species
Msp_g13262	OVA1	methionine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g11084	OVA1	methionine-tRNA ligase & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g25309	OVA1	methionine-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016381	OVA1	methionine-tRNA ligase & original description: CDS=128-1948	0.04	OrthoFinder output from all 47 species
Sam_g39434	No alias	methionine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Smo154280	OVA1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.08	OrthoFinder output from all 47 species
Solyc05g054600.3.1	OVA1, Solyc05g054600	methionine-tRNA ligase	0.08	OrthoFinder output from all 47 species
Spa_g39108	OVA1	methionine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e000706_P004	OVA1, Zm00001e000706	methionine-tRNA ligase	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004817	cysteine-tRNA ligase activity	IEP	HCCA
MF	GO:0004820	glycine-tRNA ligase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006423	cysteinyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006426	glycyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002300	aa-tRNA-synth_Ia	60	181
IPR015413	Methionyl/Leucyl_tRNA_Synth	195	422

External Links

No external refs found!

LOC_Os03g11120.1 (OVA1, LOC_Os03g11120)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation