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  5. LOC_Os03g08620.1

LOC_Os03g08620.1 (LOC_Os03g08620)


Aliases : LOC_Os03g08620

Description : transcription factor (REM)


Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g08620.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00115450 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT3G19184 No alias AP2/B3-like transcriptional factor family protein 0.03 OrthoFinder output from all 47 species
AT5G42700 No alias AP2/B3-like transcriptional factor family protein 0.06 OrthoFinder output from all 47 species
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.14 OrthoFinder output from all 47 species
Adi_g052583 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37039 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28493 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Als_g15351 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g51859 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g06897 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g25439 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g36068 No alias REM-type transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Aspi01Gene04981.t1 Aspi01Gene04981 REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene24779.t1 Aspi01Gene24779 REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene24780.t1 Aspi01Gene24780 REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene54333.t1 Aspi01Gene54333 REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61918.t1 Aspi01Gene61918 REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0198.g057387 No alias REM-type transcription factor & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.02G084400.1 Ceric.02G084400 REM-type transcription factor & original description:... 0.11 OrthoFinder output from all 47 species
Ceric.07G043800.1 Ceric.07G043800 REM-type transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.14G017400.1 Ceric.14G017400 REM-type transcription factor & original description:... 0.09 OrthoFinder output from all 47 species
Ceric.35G050300.1 Ceric.35G050300 REM-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.38G010700.1 Ceric.38G010700 REM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g15058 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g18248 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g41437 No alias REM-type transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g43688 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007552001 No alias B3 domain-containing protein Os01g0905400 OS=Oryza... 0.01 OrthoFinder output from all 47 species
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01022143001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01031761001 No alias RNA biosynthesis.transcriptional activation.B3... 0.09 OrthoFinder output from all 47 species
Gb_35990 No alias transcription factor (REM) 0.12 OrthoFinder output from all 47 species
Len_g03186 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55690 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Len_g56640 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g28691 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g29370 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433064g0010 No alias transcription factor (REM) 0.05 OrthoFinder output from all 47 species
MA_430451g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp2g08790.1 No alias transcription factor (REM) 0.07 OrthoFinder output from all 47 species
Msp_g09553 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g36795 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g08674 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g34487 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g39771 No alias REM-type transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Ppi_g01929 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Ppi_g11582 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g11583 No alias REM-type transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Ppi_g14471 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004736 No alias REM-type transcription factor & original description: CDS=35-988 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018379 No alias REM-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Sam_g14184 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g48173 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Smo424732 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Solyc01g108140.4.1 Solyc01g108140 transcription factor (REM) 0.04 OrthoFinder output from all 47 species
Solyc04g079130.2.1 Solyc04g079130 transcription factor (REM) 0.1 OrthoFinder output from all 47 species
Solyc06g007530.2.1 Solyc06g007530 transcription factor (REM) 0.04 OrthoFinder output from all 47 species
Solyc06g034140.3.1 Solyc06g034140 transcription factor (REM) 0.11 OrthoFinder output from all 47 species
Spa_g00422 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03459 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g49592 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g56976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g00720 No alias REM-type transcription factor & original description: none 0.11 OrthoFinder output from all 47 species
Tin_g04671 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11017 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g29854 No alias REM-type transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g32723 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e000624_P003 Zm00001e000624 transcription factor (REM) 0.07 OrthoFinder output from all 47 species
Zm00001e020584_P001 Zm00001e020584 transcription factor (REM) 0.08 OrthoFinder output from all 47 species
Zm00001e021364_P001 Zm00001e021364 B3 domain-containing protein Os11g0197600 OS=Oryza... 0.04 OrthoFinder output from all 47 species
Zm00001e040028_P004 Zm00001e040028 transcription factor (REM) 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 137 227
No external refs found!