LOC_Os03g07450.1 (ATHB13, LOC_Os03g07450)

Aliases : ATHB13, LOC_Os03g07450

Description : transcription factor (HD-ZIP I/II)

Gene families : OG0000129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g07450.1
Cluster	HCCA: Cluster_151

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00215130	ATHB5, ATHB-5,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
AMTR_s00010p00253290	ATHB13,...	RNA biosynthesis.transcriptional activation.HB...	0.05	OrthoFinder output from all 47 species
AMTR_s00059p00141510	ATHB40, HB40,...	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
AT1G26960	AtHB23, HB23	homeobox protein 23	0.03	OrthoFinder output from all 47 species
AT1G69780	ATHB13	Homeobox-leucine zipper protein family	0.04	OrthoFinder output from all 47 species
AT2G36610	ATHB22, HB22	homeobox protein 22	0.02	OrthoFinder output from all 47 species
AT3G01220	ATHB20, HB20	homeobox protein 20	0.05	OrthoFinder output from all 47 species
AT3G01470	ATHB1, ATHB-1,...	homeobox 1	0.07	OrthoFinder output from all 47 species
AT3G61890	HB-12, ATHB-12, ATHB12	homeobox 12	0.02	OrthoFinder output from all 47 species
AT4G36740	ATHB40, HB40, HB-5	homeobox protein 40	0.04	OrthoFinder output from all 47 species
AT4G40060	ATHB16, HB16, ATHB-16	homeobox protein 16	0.02	OrthoFinder output from all 47 species
AT5G15150	ATHB3, HB-3, ATHB-3, HAT7	homeobox 3	0.03	OrthoFinder output from all 47 species
AT5G53980	ATHB52, HB52	homeobox protein 52	0.05	OrthoFinder output from all 47 species
AT5G65310	ATHB5, ATHB-5, HB5	homeobox protein 5	0.04	OrthoFinder output from all 47 species
AT5G66700	ATHB53, HB53, HB-8	homeobox 53	0.01	OrthoFinder output from all 47 species
Adi_g016627	ATHB5, ATHB-5, HB5	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Adi_g020723	HB51, ATHB51, LMI1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g020724	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g054811	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Adi_g102220	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g116605	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g03354	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aev_g05414	ATHB16, HB16, ATHB-16	regulatory protein *(LMI1) of floral meristem identity...	0.02	OrthoFinder output from all 47 species
Aev_g09308	ATHB40, HB40, HB-5	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aev_g10824	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Als_g04970	ATHB40, HB40, HB-5	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Als_g05565	ATHB13	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Als_g10561	ATHB13	HD-ZIP I/II-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Als_g19276	ATHB21, HB21, HB-2	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Als_g37063	ATHB22, HB22	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aob_g13559	ATHB13	HD-ZIP I/II-type transcription factor & original...	0.01	OrthoFinder output from all 47 species
Aop_g30582	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene05113.t1	ATHB1, ATHB-1,...	regulatory protein *(LMI1) of floral meristem identity...	0.03	OrthoFinder output from all 47 species
Aspi01Gene07957.t1	ATHB13, Aspi01Gene07957	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene20017.t1	ATHB3, HB-3,...	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene39416.t1	ATHB5, ATHB-5,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene48842.t1	ATHB13, Aspi01Gene48842	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g009821	ATHB5, ATHB-5, HB5	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0104.g044792	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Azfi_s3184.g114979	No alias	not classified & original description: CDS=620-892	0.03	OrthoFinder output from all 47 species
Cba_g08070	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cba_g78295	ATHB5, ATHB-5, HB5	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.07G084400.1	ATHB3, HB-3,...	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.30G061300.1	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dac_g00457	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dac_g14797	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dac_g34453	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g04639	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ehy_g02341	ATHB1, ATHB-1,...	regulatory protein *(LMI1) of floral meristem identity...	0.02	OrthoFinder output from all 47 species
Ehy_g07592	HB51, ATHB51, LMI1	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g23915	ATHB5, ATHB-5, HB5	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01019012001	ATHB40, HB40, HB-5	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01019655001	HB-7, ATHB-7, ATHB7	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01020033001	ATHB13	RNA biosynthesis.transcriptional activation.HB...	0.05	OrthoFinder output from all 47 species
GSVIVT01027407001	HB-7, ATHB-7, ATHB7	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
Gb_04698	ATHB3, HB-3, ATHB-3, HAT7	transcription factor (HD-ZIP I/II)	0.05	OrthoFinder output from all 47 species
Gb_20878	ATHB3, HB-3, ATHB-3, HAT7	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
LOC_Os03g08960.1	ATHB5, ATHB-5,...	transcription factor (HD-ZIP I/II)	0.07	OrthoFinder output from all 47 species
LOC_Os03g10210.1	ATHB40, HB40,...	transcription factor (HD-ZIP I/II)	0.04	OrthoFinder output from all 47 species
LOC_Os07g39320.1	ATHB40, HB40,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
LOC_Os08g32080.1	ATHB1, ATHB-1,...	transcription factor (HD-ZIP I/II)	0.04	OrthoFinder output from all 47 species
LOC_Os08g32085.1	ATHB1, ATHB-1,...	transcription factor (HD-ZIP I/II)	0.04	OrthoFinder output from all 47 species
LOC_Os09g35910.1	HB-7, ATHB-7,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
LOC_Os10g23090.1	ATHB5, ATHB-5,...	transcription factor (HD-ZIP I/II)	0.05	OrthoFinder output from all 47 species
Len_g04607	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Len_g19610	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Lfl_g02863	ATHB5, ATHB-5, HB5	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Lfl_g03884	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Lfl_g23117	ATHB13	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
MA_10428916g0010	ATHB1, ATHB-1,...	transcription factor (HD-ZIP I/II)	0.06	OrthoFinder output from all 47 species
MA_128g0010	ATHB13	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
MA_132936g0010	ATHB3, HB-3, ATHB-3, HAT7	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
MA_19453g0050	ATHB1, ATHB-1,...	Homeobox-leucine zipper protein HAT5 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_441783g0010	AtHB23, HB23	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_9241385g0010	ATHB13	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
Mp3g02320.1	ATHB1, ATHB-1,...	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
Msp_g05256	HB51, ATHB51, LMI1	HD-ZIP I/II-type transcription factor & original...	0.01	OrthoFinder output from all 47 species
Msp_g43112	ATHB21, HB21, HB-2	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Nbi_g07247	ATHB21, HB21, HB-2	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Nbi_g07680	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Nbi_g13843	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g17854	ATHB3, HB-3, ATHB-3, HAT7	regulatory protein *(LMI1) of floral meristem identity...	0.02	OrthoFinder output from all 47 species
Ore_g17855	ATHB3, HB-3, ATHB-3, HAT7	regulatory protein *(LMI1) of floral meristem identity...	0.03	OrthoFinder output from all 47 species
Ore_g19819	ATHB5, ATHB-5, HB5	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g26580	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g30335	ATHB5, ATHB-5, HB5	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g34076	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g38546	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g41934	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g45630	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g17185	ATHB13	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pir_g19828	ATHB21, HB21, HB-2	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g22217	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pir_g28211	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g40617	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Pnu_g06112	ATHB13	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pnu_g07961	ATHB16, HB16, ATHB-16	regulatory protein *(LMI1) of floral meristem identity...	0.04	OrthoFinder output from all 47 species
Pnu_g15485	ATHB13	regulatory protein *(LMI1) of floral meristem identity...	0.02	OrthoFinder output from all 47 species
Pnu_g32938	HB51, ATHB51, LMI1	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0138.g022579	ATHB21, HB21, HB-2	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Smo81609	ATHB16, HB16, ATHB-16	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
Solyc01g010600.4.1	AtHB23, HB23,...	transcription factor (HD-ZIP I/II)	0.05	OrthoFinder output from all 47 species
Solyc02g067410.2.1	ATHB3, HB-3,...	transcription factor (HD-ZIP I/II)	0.04	OrthoFinder output from all 47 species
Solyc02g086930.4.1	ATHB1, ATHB-1,...	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
Solyc02g087840.3.1	ATHB3, HB-3,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Solyc03g082550.3.1	HB-7, ATHB-7,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Solyc05g006980.3.1	ATHB1, ATHB-1,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Solyc06g053220.3.1	HB-7, ATHB-7,...	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
Solyc09g008810.3.1	HB51, ATHB51,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Solyc10g150101.1.1	ATHB52, HB52,...	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
Spa_g06237	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Spa_g38872	AtHB23, HB23	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Spa_g46327	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Spa_g55691	ATHB13	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Zm00001e000532_P002	ATHB13, Zm00001e000532	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
Zm00001e002803_P001	ATHB16, HB16,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Zm00001e004824_P001	ATHB3, HB-3,...	transcription factor (HD-ZIP I/II)	0.06	OrthoFinder output from all 47 species
Zm00001e010004_P002	ATHB16, HB16,...	transcription factor (HD-ZIP I/II)	0.01	OrthoFinder output from all 47 species
Zm00001e010218_P001	HB-7, ATHB-7,...	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
Zm00001e010637_P001	ATHB40, HB40,...	transcription factor (HD-ZIP I/II)	0.01	OrthoFinder output from all 47 species
Zm00001e012829_P001	ATHB13, Zm00001e012829	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Zm00001e034433_P001	ATHB16, HB16,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Zm00001e035368_P003	ATHB40, HB40,...	transcription factor (HD-ZIP I/II)	0.01	OrthoFinder output from all 47 species
Zm00001e038901_P001	ATHB13, Zm00001e038901	transcription factor (HD-ZIP I/II)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	HCCA
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	HCCA
MF	GO:0005094	Rho GDP-dissociation inhibitor activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0010274	hydrotropism	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	130	183
IPR003106	Leu_zip_homeo	185	225

External Links

No external refs found!

LOC_Os03g07450.1 (ATHB13, LOC_Os03g07450)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation