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  5. LOC_Os03g06950.1

LOC_Os03g06950.1 (LOC_Os03g06950)


Aliases : LOC_Os03g06950

Description : no hits & (original description: none)


Gene families : OG0003321 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003321_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g06950.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00132870 evm_27.TU.AmTr_v1... No description available 0.09 OrthoFinder output from all 47 species
AT3G47890 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.12 OrthoFinder output from all 47 species
AT3G47910 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.12 OrthoFinder output from all 47 species
Adi_g058350 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g080721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g14795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04590 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19280 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g32535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22460 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g14015 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene09610.t1 Aspi01Gene09610 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43342.t1 Aspi01Gene43342 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43347.t1 Aspi01Gene43347 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0327.g065237 No alias not classified & original description: CDS=1-5397 0.04 OrthoFinder output from all 47 species
Ceric.1Z176700.1 Ceric.1Z176700 not classified & original description: pacid=50637339... 0.04 OrthoFinder output from all 47 species
Ceric.1Z194000.1 Ceric.1Z194000 not classified & original description: pacid=50618972... 0.04 OrthoFinder output from all 47 species
Cre12.g508250 No alias No description available 0.05 OrthoFinder output from all 47 species
Dac_g28933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04153 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g07008 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g16619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008079001 No alias No description available 0.06 OrthoFinder output from all 47 species
Len_g49533 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Lfl_g12618 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
MA_46922g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Msp_g13542 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g05015 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44266 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g18226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13760 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008734 No alias not classified & original description: CDS=269-5383 0.03 OrthoFinder output from all 47 species
Sam_g24494 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g071120.3.1 Solyc06g071120 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Spa_g14539 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02198 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e039017_P003 Zm00001e039017 no hits & (original description: none) 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016579 protein deubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006865 DUF629 320 812
IPR006866 DUF627_N 45 153
IPR001394 Peptidase_C19_UCH 1273 1574
No external refs found!