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  5. LOC_Os02g50560.1

LOC_Os02g50560.1 (ISE2, PDE317, EMB25,...)


Aliases : ISE2, PDE317, EMB25, LOC_Os02g50560

Description : RNA helicase (ISE2)


Gene families : OG0004771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004771_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g50560.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00178540 ISE2, PDE317,... RNA processing.organelle machineries.RNA... 0.08 OrthoFinder output from all 47 species
AT1G70070 ISE2, PDE317, EMB25 DEAD/DEAH box helicase, putative 0.04 OrthoFinder output from all 47 species
Ala_g22694 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Aop_g13240 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0003.g007647 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.05 OrthoFinder output from all 47 species
Cba_g14553 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Ceric.18G021200.1 ISE2, PDE317,... group-II intron splicing RNA helicase *(ISE2) & original... 0.09 OrthoFinder output from all 47 species
Dcu_g20011 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.07 OrthoFinder output from all 47 species
Dde_g08182 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g05098 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01020137001 ISE2, PDE317, EMB25 RNA processing.organelle machineries.RNA... 0.08 OrthoFinder output from all 47 species
Gb_35993 ISE2, PDE317, EMB25 RNA helicase (ISE2) 0.05 OrthoFinder output from all 47 species
Len_g22559 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g12767 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
MA_10437000g0010 ISE2, PDE317, EMB25 RNA helicase (ISE2) 0.01 OrthoFinder output from all 47 species
MA_10437000g0020 ISE2, PDE317, EMB25 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic... 0.03 OrthoFinder output from all 47 species
Mp4g01470.1 ISE2, PDE317, EMB25 RNA helicase (ISE2) 0.08 OrthoFinder output from all 47 species
Msp_g14107 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g18791 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Ore_g19053 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.1 OrthoFinder output from all 47 species
Pir_g14171 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g09563 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g08266 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0222.g026240 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Sam_g07224 No alias group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Smo440019 ISE2, PDE317, EMB25 Protein modification.phosphorylation.TKL kinase... 0.02 OrthoFinder output from all 47 species
Solyc05g006530.4.1 ISE2, PDE317,... RNA helicase (ISE2) 0.02 OrthoFinder output from all 47 species
Zm00001e015769_P001 ISE2, PDE317,... RNA helicase (ISE2) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 173 325
IPR012961 Ski2/MTR4_C 1008 1174
No external refs found!