Aliases : LOC_Os02g37430
Description : component Sm-D1 of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex
Gene families : OG0003223 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003223_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os02g37430.1 | |
Cluster | HCCA: Cluster_26 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Als_g04085 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g53191 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000754.23 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.04 | OrthoFinder output from all 47 species | |
Cre16.g665400 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01014776001 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
Mp1g03900.1 | No alias | component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... | 0.04 | OrthoFinder output from all 47 species | |
Pp3c5_16280V3.1 | Pp3c5_16280 | Small nuclear ribonucleoprotein family protein | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
CC | GO:0000439 | transcription factor TFIIH core complex | IEP | HCCA |
MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
CC | GO:0005759 | mitochondrial matrix | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006289 | nucleotide-excision repair | IEP | HCCA |
BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
BP | GO:0006367 | transcription initiation at RNA polymerase II promoter | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
CC | GO:0016592 | mediator complex | IEP | HCCA |
CC | GO:0031974 | membrane-enclosed lumen | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
CC | GO:0043233 | organelle lumen | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
CC | GO:0070013 | intracellular organelle lumen | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001163 | LSM_dom_euk/arc | 5 | 69 |
No external refs found! |