LOC_Os02g08544.1 (KNAT3, LOC_Os02g08544)

Aliases : KNAT3, LOC_Os02g08544

Description : transcription factor (KNOX)

Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g08544.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g017500	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g058965	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g079520	KNAT3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g098728	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g15588	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g16830	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09080	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01009273001	BP, BP1, KNAT1	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01035921001	KNAT3	RNA biosynthesis.transcriptional activation.HB...	0.05	OrthoFinder output from all 47 species
Ore_g25529	BP, BP1, KNAT1	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026749	KNAT3	not classified & original description: CDS=1-780	0.02	OrthoFinder output from all 47 species
Sam_g36645	No alias	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo90744	KNAT3	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
Spa_g22911	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g40064	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e000173_P003	KNAT7, IXR11,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Zm00001e013853_P001	KNAT3, Zm00001e013853	transcription factor (KNOX)	0.09	OrthoFinder output from all 47 species
Zm00001e017489_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005539	ELK_dom	205	226
IPR008422	Homeobox_KN_domain	245	284
IPR005540	KNOX1	43	80
IPR005541	KNOX2	102	148

External Links

No external refs found!

LOC_Os02g08544.1 (KNAT3, LOC_Os02g08544)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation