1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os02g08380.1

LOC_Os02g08380.1 (LOC_Os02g08380)


Aliases : LOC_Os02g08380

Description : stromal sorting factor of thylakoid membrane SRP insertion system (STIC2)


Gene families : OG0004403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004403_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g08380.1

Target Alias Description ECC score Gene Family Method Actions
AT2G24020 No alias Uncharacterised BCR, YbaB family COG0718 0.09 OrthoFinder output from all 47 species
AT4G30620 No alias Uncharacterised BCR, YbaB family COG0718 0.04 OrthoFinder output from all 47 species
Aev_g04539 No alias stromal sorting factor of thylakoid membrane SRP... 0.02 OrthoFinder output from all 47 species
Aob_g03986 No alias stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Aop_g70924 No alias stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Aspi01Gene29776.t1 Aspi01Gene29776 stromal sorting factor of thylakoid membrane SRP... 0.03 OrthoFinder output from all 47 species
Azfi_s0402.g068332 No alias stromal sorting factor of thylakoid membrane SRP... 0.03 OrthoFinder output from all 47 species
Ceric.29G037500.1 Ceric.29G037500 stromal sorting factor of thylakoid membrane SRP... 0.06 OrthoFinder output from all 47 species
Ceric.35G009300.1 Ceric.35G009300 stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Dac_g11793 No alias stromal sorting factor of thylakoid membrane SRP... 0.02 OrthoFinder output from all 47 species
Dcu_g37307 No alias stromal sorting factor of thylakoid membrane SRP... 0.03 OrthoFinder output from all 47 species
Ehy_g10854 No alias stromal sorting factor of thylakoid membrane SRP... 0.06 OrthoFinder output from all 47 species
GSVIVT01023623001 No alias Protein translocation.chloroplast.thylakoid membrane SRP... 0.07 OrthoFinder output from all 47 species
Gb_22716 No alias stromal sorting factor of thylakoid membrane SRP... 0.06 OrthoFinder output from all 47 species
Len_g09897 No alias stromal sorting factor of thylakoid membrane SRP... 0.02 OrthoFinder output from all 47 species
Lfl_g00568 No alias stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Mp2g03740.1 No alias stromal sorting factor of thylakoid membrane SRP... 0.07 OrthoFinder output from all 47 species
Nbi_g08626 No alias stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Pir_g08017 No alias stromal sorting factor of thylakoid membrane SRP... 0.02 OrthoFinder output from all 47 species
Pir_g17206 No alias stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009199 No alias stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Sam_g27849 No alias stromal sorting factor of thylakoid membrane SRP... 0.03 OrthoFinder output from all 47 species
Sam_g37120 No alias stromal sorting factor of thylakoid membrane SRP... 0.06 OrthoFinder output from all 47 species
Solyc12g009980.2.1 Solyc12g009980 stromal sorting factor of thylakoid membrane SRP... 0.11 OrthoFinder output from all 47 species
Tin_g05353 No alias stromal sorTing factor of thylakoid membrane SRP... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004401 YbaB/EbfC 86 174
No external refs found!