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  5. LOC_Os02g03950.3

LOC_Os02g03950.3 (LOC_Os02g03950)


Aliases : LOC_Os02g03950

Description : no hits & (original description: none)


Gene families : OG0001516 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001516_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g03950.3

Target Alias Description ECC score Gene Family Method Actions
AT1G50440 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 OrthoFinder output from all 47 species
Ala_g06539 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13055 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g02949 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Cre12.g517800 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g03189 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03816 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Gb_08343 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g05186 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Mp1g23920.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Tin_g01949 No alias E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e020674_P003 Zm00001e020674 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Zm00001e021209_P002 Zm00001e021209 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 85 132
No external refs found!