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  5. LOC_Os01g64960.1

LOC_Os01g64960.1 (NPQ4, PSBS, LOC_Os01g64960)


Aliases : NPQ4, PSBS, LOC_Os01g64960

Description : non-photochemical quenching PsbS protein


Gene families : OG0002938 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002938_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g64960.1
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00154940 NPQ4, PSBS,... Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder output from all 47 species
AT1G44575 NPQ4, PSBS Chlorophyll A-B binding family protein 0.11 OrthoFinder output from all 47 species
Adi_g083731 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.12 OrthoFinder output from all 47 species
Adi_g083732 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.11 OrthoFinder output from all 47 species
Adi_g083733 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.11 OrthoFinder output from all 47 species
Aev_g49065 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.05 OrthoFinder output from all 47 species
Ala_g13911 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.06 OrthoFinder output from all 47 species
Als_g10582 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.03 OrthoFinder output from all 47 species
Aob_g25558 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.05 OrthoFinder output from all 47 species
Aop_g21918 NPQ4, PSBS not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52546.t1 NPQ4, PSBS,... non-photochemical quenching PsbS protein & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000408 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.07 OrthoFinder output from all 47 species
Azfi_s0314.g064232 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.07 OrthoFinder output from all 47 species
Cba_g01831 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.04 OrthoFinder output from all 47 species
Ceric.36G021200.1 NPQ4, PSBS,... non-photochemical quenching PsbS protein & original... 0.03 OrthoFinder output from all 47 species
Cre01.g016750 NPQ4, PSBS Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Cre16.g667250 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g26756 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.04 OrthoFinder output from all 47 species
Dcu_g00800 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.11 OrthoFinder output from all 47 species
Dde_g06083 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.08 OrthoFinder output from all 47 species
Ehy_g06548 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.07 OrthoFinder output from all 47 species
GSVIVT01008866001 NPQ4, PSBS Photosynthesis.photophosphorylation.photosystem... 0.12 OrthoFinder output from all 47 species
Gb_30734 NPQ4, PSBS non-photochemical quenching PsbS protein 0.06 OrthoFinder output from all 47 species
Len_g07934 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.08 OrthoFinder output from all 47 species
Lfl_g30875 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.09 OrthoFinder output from all 47 species
Mp8g05910.1 NPQ4, PSBS non-photochemical quenching PsbS protein 0.05 OrthoFinder output from all 47 species
Msp_g30503 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.04 OrthoFinder output from all 47 species
Msp_g39169 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.04 OrthoFinder output from all 47 species
Nbi_g04085 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.05 OrthoFinder output from all 47 species
Ore_g05767 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.05 OrthoFinder output from all 47 species
Ore_g31160 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.05 OrthoFinder output from all 47 species
Ore_g32353 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.05 OrthoFinder output from all 47 species
Pir_g51143 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.05 OrthoFinder output from all 47 species
Pnu_g07004 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.05 OrthoFinder output from all 47 species
Pnu_g19930 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.05 OrthoFinder output from all 47 species
Pnu_g32714 NPQ4, PSBS not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16538 NPQ4, PSBS not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48261 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.04 OrthoFinder output from all 47 species
Sam_g11981 No alias non-photochemical quenching PsbS protein & original... 0.08 OrthoFinder output from all 47 species
Solyc06g060340.3.1 NPQ4, PSBS,... non-photochemical quenching PsbS protein 0.06 OrthoFinder output from all 47 species
Spa_g17275 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.08 OrthoFinder output from all 47 species
Tin_g11495 NPQ4, PSBS non-photochemical quenching PsbS protein & original... 0.09 OrthoFinder output from all 47 species
Zm00001e019137_P001 NPQ4, PSBS,... non-photochemical quenching PsbS protein 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 85 214
No external refs found!