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  5. LOC_Os01g53150.2

LOC_Os01g53150.2 (LOC_Os01g53150)


Aliases : LOC_Os01g53150

Description : GTP-binding protein At2g22870 OS=Arabidopsis thaliana (sp|o81004|y2287_arath : 299.0)


Gene families : OG0001817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001817_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g53150.2

Target Alias Description ECC score Gene Family Method Actions
AT2G22870 EMB2001 P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
AT5G11480 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Adi_g043228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g052096 EMB2001 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g29056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12731 EMB2001 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03254 EMB2001 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18038.t1 Aspi01Gene18038 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0084.g039095 No alias not classified & original description: CDS=51-1235 0.02 OrthoFinder output from all 47 species
Ceric.09G097300.1 Ceric.09G097300 not classified & original description: pacid=50586531... 0.02 OrthoFinder output from all 47 species
Ceric.32G033500.1 Ceric.32G033500 not classified & original description: pacid=50598717... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000114.47 EMB2001 GTP-binding protein At2g22870 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000405.48 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre12.g519700 EMB2001 GTP-binding protein At2g22870 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre12.g524950 EMB2001 GTP-binding protein At2g22870 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g12809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g23402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g28663 EMB2001 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09689 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_34715 EMB2001 GTP-binding protein At2g22870 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g12632 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp8g02390.1 No alias GTP-binding protein At2g22870 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Msp_g10085 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11675 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04362 EMB2001 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g23882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo110012 No alias GTP-binding protein At2g22870 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc09g008730.3.1 EMB2001, Solyc09g008730 GTP-binding protein At2g22870 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g09757 EMB2001 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12127 EMB2001 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e019901_P002 Zm00001e019901 GTP-binding protein At2g22870 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Zm00001e038655_P001 EMB2001, Zm00001e038655 GTP-binding protein At2g22870 OS=Arabidopsis thaliana... 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR006073 GTP-bd 136 253
No external refs found!