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  5. LOC_Os01g49660.1

LOC_Os01g49660.1 (LOC_Os01g49660)


Aliases : LOC_Os01g49660

Description : ER-associated protein (Reticulon)


Gene families : OG0000272 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000272_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g49660.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00221140 evm_27.TU.AmTr_v1... Reticulon-like protein B9 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G68230 No alias Reticulon family protein 0.06 OrthoFinder output from all 47 species
AT3G18260 No alias Reticulon family protein 0.06 OrthoFinder output from all 47 species
Als_g40043 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Dcu_g36852 BTI1, RTNLB1 ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01008336001 No alias Reticulon-like protein B9 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01011845001 No alias Reticulon-like protein B9 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Len_g09513 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Pnu_g12300 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Ppi_g15653 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Solyc03g119190.3.1 Solyc03g119190 ER-associated protein (Reticulon) 0.06 OrthoFinder output from all 47 species
Solyc05g008890.3.1 Solyc05g008890 ER-associated protein (Reticulon) 0.03 OrthoFinder output from all 47 species
Zm00001e012762_P001 Zm00001e012762 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e028102_P001 Zm00001e028102 ER-associated protein (Reticulon) 0.12 OrthoFinder output from all 47 species
Zm00001e032328_P001 Zm00001e032328 ER-associated protein (Reticulon) 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR003388 Reticulon 33 172
No external refs found!