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  5. LOC_Os01g43120.1

LOC_Os01g43120.1 (LOC_Os01g43120)


Aliases : LOC_Os01g43120

Description : DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa subsp. japonica (sp|q5zbh5|rh25_orysj : 980.0)


Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g43120.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00107p00082420 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G08610 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Ala_g15094 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g07563 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07564 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67886 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g03770 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06438 No alias mRNA helicase *(RH31) & original description: none 0.08 OrthoFinder output from all 47 species
GSVIVT01019804001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
GSVIVT01027084001 No alias DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Len_g12117 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g39024 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g095740.4.1 Solyc01g095740 DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e020452_P002 Zm00001e020452 DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa... 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 371 479
IPR011545 DEAD/DEAH_box_helicase_dom 150 328
No external refs found!