Description : PPD1 protein involved in PS-I assembly
Gene families : OG0006534 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006534_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_81231g0010 | |
Cluster | HCCA: Cluster_100 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT4G15510 | No alias | Photosystem II reaction center PsbP family protein | 0.05 | OrthoFinder output from all 47 species | |
Als_g00378 | No alias | protein involved in PS-I assembly *(PPD1) & original... | 0.07 | OrthoFinder output from all 47 species | |
Aop_g06568 | No alias | protein involved in PS-I assembly *(PPD1) & original... | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene47777.t1 | Aspi01Gene47777 | protein involved in PS-I assembly *(PPD1) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.27G030500.1 | Ceric.27G030500 | protein involved in PS-I assembly *(PPD1) & original... | 0.05 | OrthoFinder output from all 47 species | |
Cre08.g362900 | No alias | Photosynthesis.photophosphorylation.photosystem... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g08500 | No alias | protein involved in PS-I assembly *(PPD1) & original... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g37634 | No alias | protein involved in PS-I assembly *(PPD1) & original... | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os07g17390.1 | LOC_Os07g17390 | PPD1 protein involved in PS-I assembly | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os12g37710.1 | LOC_Os12g37710 | PPD1 protein involved in PS-I assembly | 0.06 | OrthoFinder output from all 47 species | |
Lfl_g08661 | No alias | protein involved in PS-I assembly *(PPD1) & original... | 0.11 | OrthoFinder output from all 47 species | |
Mp1g27590.1 | No alias | PPD1 protein involved in PS-I assembly | 0.06 | OrthoFinder output from all 47 species | |
Msp_g26208 | No alias | protein involved in PS-I assembly *(PPD1) & original... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g19709 | No alias | protein involved in PS-I assembly *(PPD1) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g08071 | No alias | protein involved in PS-I assembly *(PPD1) & original... | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0002.g001177 | No alias | protein involved in PS-I assembly *(PPD1) & original... | 0.09 | OrthoFinder output from all 47 species | |
Solyc01g106090.3.1 | Solyc01g106090 | PPD1 protein involved in PS-I assembly | 0.09 | OrthoFinder output from all 47 species | |
Spa_g12584 | No alias | protein involved in PS-I assembly *(PPD1) & original... | 0.07 | OrthoFinder output from all 47 species | |
Tin_g00363 | No alias | protein involved in PS-I assembly *(PPD1) & original... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e002887_P002 | Zm00001e002887 | PPD1 protein involved in PS-I assembly | 0.1 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005509 | calcium ion binding | IEA | Interproscan |
CC | GO:0009523 | photosystem II | IEA | Interproscan |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEA | Interproscan |
BP | GO:0015979 | photosynthesis | IEA | Interproscan |
CC | GO:0019898 | extrinsic component of membrane | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
MF | GO:0016831 | carboxy-lyase activity | IEP | HCCA |
MF | GO:0016853 | isomerase activity | IEP | HCCA |
MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002683 | PsbP_C | 83 | 258 |
No external refs found! |