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  5. MA_436401g0010

MA_436401g0010


Description : Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana (sp|q940z1|ppr51_arath : 234.0)


Gene families : OG0005460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_436401g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00026400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g01970... 0.02 OrthoFinder output from all 47 species
AT1G19520 NFD5 pentatricopeptide (PPR) repeat-containing protein 0.04 OrthoFinder output from all 47 species
Adi_g022181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65905.t1 Aspi01Gene65905 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.33G040200.1 Ceric.33G040200 not classified & original description: pacid=50607757... 0.03 OrthoFinder output from all 47 species
GSVIVT01009725001 NFD5 Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.03 OrthoFinder output from all 47 species
Gb_09266 NFD5 Pentatricopeptide repeat-containing protein At1g01970... 0.05 OrthoFinder output from all 47 species
Gb_41087 NFD5 Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.02 OrthoFinder output from all 47 species
LOC_Os02g39820.1 NFD5, LOC_Os02g39820 Pentatricopeptide repeat-containing protein At1g19525... 0.06 OrthoFinder output from all 47 species
Msp_g14468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g025210.2.1 NFD5, Solyc07g025210 Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.04 OrthoFinder output from all 47 species
Zm00001e015082_P001 NFD5, Zm00001e015082 Pentatricopeptide repeat-containing protein At1g19525... 0.06 OrthoFinder output from all 47 species
Zm00001e035782_P001 Zm00001e035782 Pentatricopeptide repeat-containing protein At1g01970... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 67 127
IPR033443 PPR_long 135 266
No external refs found!