MA_20467g0020 (AGL10, CAL1, CAL)

Aliases : AGL10, CAL1, CAL

Description : MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica (sp|q6eu39|mads6_orysj : 95.9)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_20467g0020
Cluster	HCCA: Cluster_136

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	ANR1, AGL44,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.05	OrthoFinder output from all 47 species
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.06	OrthoFinder output from all 47 species
AT5G20240	PI	K-box region and MADS-box transcription factor family protein	0.05	OrthoFinder output from all 47 species
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.03	OrthoFinder output from all 47 species
Adi_g108171	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g05477	AGL6	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g33008	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0242.g059800	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dde_g51933	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01008806001	PI	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01037031001	AGL62	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
Gb_16301	STK, AGL11	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Lfl_g13166	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g16827	AGL21	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g37644	AGL21	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_9284799g0010	AGL14	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Msp_g06052	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g20990	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g42970	AGL30	MADS/AGL-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g44137	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g18075	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Pir_g64963	AGL6	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001705	AGL32, TT16, ABS	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010711	No alias	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sam_g27440	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo85851	AGL10, CAL1, CAL	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Solyc02g071730.4.1	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Solyc03g114840.3.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
Spa_g47543	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0008374	O-acyltransferase activity	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016843	amine-lyase activity	IEP	HCCA
MF	GO:0016844	strictosidine synthase activity	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	21	80

External Links

No external refs found!

MA_20467g0020 (AGL10, CAL1, CAL)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation