Aliases : STV1, RPL24, RPL24B
Description : pri-miRNA recruitment factor (STV1). component RPL24 of LSU proteome component
Gene families : OG0002539 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002539_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_14639g0010 | |
Cluster | HCCA: Cluster_162 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00069p00095150 | RPL24A,... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.04 | OrthoFinder output from all 47 species | |
AT2G36620 | RPL24A | ribosomal protein L24 | 0.04 | OrthoFinder output from all 47 species | |
AT3G53020 | STV1, RPL24, RPL24B | Ribosomal protein L24e family protein | 0.04 | OrthoFinder output from all 47 species | |
Adi_g016157 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Adi_g039871 | STV1, RPL24, RPL24B | component *(eL24) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g20428 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g00606 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g07149 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene17165.t1 | STV1, RPL24,... | component *(eL24) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.27G010000.1 | STV1, RPL24,... | component *(eL24) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Cre09.g391097 | STV1, RPL24, RPL24B | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g13575 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g14497 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g45784 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01010601001 | RPL24A | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01034676001 | RPL24A | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.04 | OrthoFinder output from all 47 species | |
Gb_07396 | STV1, RPL24, RPL24B | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os01g59990.1 | STV1, RPL24,... | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os07g12250.1 | STV1, RPL24,... | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.02 | OrthoFinder output from all 47 species | |
Mp5g17510.1 | RPL24A | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.03 | OrthoFinder output from all 47 species | |
Pp3c13_10770V3.1 | RPL24A, Pp3c13_10770 | ribosomal protein L24 | 0.02 | OrthoFinder output from all 47 species | |
Pp3c3_8930V3.1 | RPL24A, Pp3c3_8930 | Ribosomal protein L24e family protein | 0.01 | OrthoFinder output from all 47 species | |
Sam_g04326 | No alias | component *(eL24) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g06964 | No alias | component *(eL24) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Solyc09g008800.3.1 | STV1, RPL24,... | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.03 | OrthoFinder output from all 47 species | |
Solyc10g085480.2.1 | RPL24A, Solyc10g085480 | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g08054 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g31362 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e004947_P001 | STV1, RPL24,... | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e012463_P004 | STV1, RPL24,... | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000049 | tRNA binding | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity | IEP | HCCA |
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005839 | proteasome core complex | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006528 | asparagine metabolic process | IEP | HCCA |
BP | GO:0006529 | asparagine biosynthetic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | HCCA |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | HCCA |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
MF | GO:0070003 | threonine-type peptidase activity | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | HCCA |
BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000988 | Ribosomal_L24e-rel | 28 | 86 |
No external refs found! |