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  5. MA_10429035g0030

MA_10429035g0030 (EMB1989, RPB2, NRPB2)


Aliases : EMB1989, RPB2, NRPB2

Description : DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana (sp|p38420|nrpb2_arath : 634.0)


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10429035g0030

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00020p00246930 NRPC2,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.06 OrthoFinder output from all 47 species
AMTR_s00068p00181410 EMB1989, RPB2,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.06 OrthoFinder output from all 47 species
Adi_g018831 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Ala_g21244 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Als_g03892 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.07 OrthoFinder output from all 47 species
Als_g07605 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene30461.t2 DRD2, NRPE2,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g01346 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Ceric.05G021300.1 EMB1989, RPB2,... component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Ceric.30G032600.1 NRPC2, Ceric.30G032600 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000158.16 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder output from all 47 species
Cre02.g075150 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Cre12.g542800 NRPC2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Dac_g02906 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.04 OrthoFinder output from all 47 species
Dcu_g09431 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g17296 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
GSVIVT01020543001 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.06 OrthoFinder output from all 47 species
GSVIVT01036596001 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_30006 EMB1989, RPB2, NRPB2 subunit 2 of Pol II RNA polymerase 0.03 OrthoFinder output from all 47 species
LOC_Os03g44484.1 EMB1989, RPB2,... DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.03 OrthoFinder output from all 47 species
Len_g29891 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
Lfl_g04274 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
Lfl_g12805 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Mp4g21160.1 EMB1989, RPB2, NRPB2 subunit 2 of Pol II RNA polymerase 0.02 OrthoFinder output from all 47 species
Mp6g06170.1 NRPC2 subunit 2 of Pol III RNA polymerase 0.02 OrthoFinder output from all 47 species
Msp_g14155 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Ore_g18280 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.05 OrthoFinder output from all 47 species
Ore_g25703 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Sam_g26686 No alias component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Smo148107 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder output from all 47 species
Solyc08g075940.4.1 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.01 OrthoFinder output from all 47 species
Zm00001e005007_P001 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.02 OrthoFinder output from all 47 species
Zm00001e012400_P001 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004819 glutamine-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP HCCA
BP GO:0006914 autophagy IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR007644 RNA_pol_bsu_protrusion 1 320
IPR007642 RNA_pol_Rpb2_2 113 272
No external refs found!