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  5. Pp3c9_12701V3.1

Pp3c9_12701V3.1 (EMB2780, Pp3c9_12701)


Aliases : EMB2780, Pp3c9_12701

Description : DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases


Gene families : OG0002006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002006_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c9_12701V3.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene70665.t1 EMB2780, Aspi01Gene70665 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pp3c10_25280V3.1 EMB2780, Pp3c10_25280 DNA binding;nucleotide binding;nucleic acid... 0.02 OrthoFinder output from all 47 species
Pp3c13_14630V3.1 EMB2780, Pp3c13_14630 DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from all 47 species
Pp3c14_3970V3.1 Pp3c14_3970 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c15_13750V3.1 Pp3c15_13750 DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from all 47 species
Pp3c16_6050V3.1 EMB2780, Pp3c16_6050 DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from all 47 species
Pp3c25_2990V3.1 EMB2780, Pp3c25_2990 DNA binding;nucleotide binding;nucleic acid... 0.06 OrthoFinder output from all 47 species
Pp3c4_24900V3.1 Pp3c4_24900 No annotation 0.03 OrthoFinder output from all 47 species
Pp3c6_15720V3.1 EMB2780, Pp3c6_15720 DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from all 47 species
Solyc10g081250.3.1 EMB2780, Solyc10g081250 component POLD1 of DNA polymerase delta complex 0.01 OrthoFinder output from all 47 species
Zm00001e024553_P001 EMB2780, Zm00001e024553 component POLD1 of DNA polymerase delta complex 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006133 DNA-dir_DNA_pol_B_exonuc 29 348
IPR006134 DNA-dir_DNA_pol_B_multi_dom 416 497
No external refs found!