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  5. Pp3c6_20400V3.1

Pp3c6_20400V3.1 (CPN60B, LEN1, Pp3c6_20400)


Aliases : CPN60B, LEN1, Pp3c6_20400

Description : chaperonin 60 beta


Gene families : OG0000688 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000688_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c6_20400V3.1
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00080200 CH-CPN60A,... External stimuli response.temperature.Hsp... 0.01 OrthoFinder output from all 47 species
AMTR_s00062p00185880 CH-CPN60A,... External stimuli response.temperature.Hsp... 0.02 OrthoFinder output from all 47 species
AMTR_s00106p00119930 CPN60B, LEN1,... External stimuli response.temperature.Hsp... 0.02 OrthoFinder output from all 47 species
AT1G55490 CPN60B, LEN1 chaperonin 60 beta 0.04 OrthoFinder output from all 47 species
Azfi_s0029.g024060 CPN60B, LEN1 chaperone *(Hsp60) & original description: CDS=155-2068 0.02 OrthoFinder output from all 47 species
Cre04.g231222 CH-CPN60A, CPN60A, SLP External stimuli response.temperature.Hsp... 0.03 OrthoFinder output from all 47 species
Cre07.g339150 No alias External stimuli response.temperature.Hsp... 0.02 OrthoFinder output from all 47 species
Cre17.g741450 CPN60B, LEN1 External stimuli response.temperature.Hsp... 0.04 OrthoFinder output from all 47 species
GSVIVT01025490001 No alias External stimuli response.temperature.Hsp... 0.01 OrthoFinder output from all 47 species
LOC_Os12g17910.1 CH-CPN60A,... subunit alpha of Cpn60 chaperonin complex. component... 0.02 OrthoFinder output from all 47 species
Len_g13340 CH-CPN60A, CPN60A, SLP chaperone *(Hsp60) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g28966 CPN60B, LEN1 chaperone *(Hsp60) & original description: none 0.02 OrthoFinder output from all 47 species
Mp1g21640.1 No alias subunit beta of Cpn60 chaperonin complex. component... 0.04 OrthoFinder output from all 47 species
Mp5g20470.1 CH-CPN60A, CPN60A, SLP subunit alpha of Cpn60 chaperonin complex. component... 0.05 OrthoFinder output from all 47 species
Nbi_g03062 CH-CPN60A, CPN60A, SLP chaperone *(Hsp60) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27869 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09116 CH-CPN60A, CPN60A, SLP chaperone *(Hsp60) & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g31540 CPN60B, LEN1 chaperone *(Hsp60) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016064 No alias chaperone *(Hsp60) & original description: CDS=1-1875 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0182.g024885 CPN60B, LEN1 chaperone *(Hsp60) & original description: CDS=136-1980 0.01 OrthoFinder output from all 47 species
Spa_g26363 CPN60B, LEN1 chaperone *(Hsp60) & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e029825_P001 CPN60B, LEN1,... subunit beta of Cpn60 chaperonin complex. component... 0.02 OrthoFinder output from all 47 species
Zm00001e031536_P001 CH-CPN60A,... subunit alpha of Cpn60 chaperonin complex. component... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002423 Cpn60/GroEL/TCP-1 79 581
No external refs found!