Pp3c3_35890V3.1 (Pp3c3_35890)

Aliases : Pp3c3_35890

Description : DNA-directed RNA polymerase family protein

Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c3_35890V3.1
Cluster	HCCA: Cluster_56

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00020p00247890	NRPC2,...	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
AMTR_s00068p00181410	EMB1989, RPB2,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.01	OrthoFinder output from all 47 species
Adi_g004148	EMB1989, RPB2, NRPB2	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ala_g36751	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aob_g22504	EMB1989, RPB2, NRPB2	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene14108.t1	DRD2, NRPE2,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene14109.t1	NRPD2B, Aspi01Gene14109	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene14110.t1	NRPD2B, Aspi01Gene14110	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene30461.t2	DRD2, NRPE2,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g17872	NRPC2	component *(NRPC2) of RNA polymerase III complex &...	0.01	OrthoFinder output from all 47 species
Ore_g14531	EMB1989, RPB2, NRPB2	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Pp3c15_19410V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.07	OrthoFinder output from all 47 species
Pp3c16_10710V3.1	Pp3c16_10710	DNA-directed RNA polymerase family protein	0.06	OrthoFinder output from all 47 species
Pp3c16_6070V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.04	OrthoFinder output from all 47 species
Pp3c17_12270V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from all 47 species
Pp3c21_8540V3.1	NRPC2, Pp3c21_8540	nuclear RNA polymerase C2	0.07	OrthoFinder output from all 47 species
Pp3c24_8970V3.1	Pp3c24_8970	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from all 47 species
Pp3c25_15140V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.02	OrthoFinder output from all 47 species
Pp3c3_37780V3.1	Pp3c3_37780	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from all 47 species
Pp3c4_24950V3.1	Pp3c4_24950	nuclear RNA polymerase C2	0.04	OrthoFinder output from all 47 species
Pp3c5_1420V3.1	Pp3c5_1420	nuclear RNA polymerase C2	0.03	OrthoFinder output from all 47 species
Pp3c5_18580V3.1	EMB1989, RPB2,...	nuclear RNA polymerase A2	0.02	OrthoFinder output from all 47 species
Pp3c9_12670V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from all 47 species
Pp3c9_12710V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from all 47 species
Pp3s67_170V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.02	OrthoFinder output from all 47 species
Tin_g03543	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.01	OrthoFinder output from all 47 species
Zm00001e041755_P001	DRD2, NRPE2,...	subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007641	RNA_pol_Rpb2_7	58	130
IPR007120	DNA-dir_RNAP_su2_dom	2	55

External Links

No external refs found!

Pp3c3_35890V3.1 (Pp3c3_35890)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation