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  5. Pp3c26_6490V3.1

Pp3c26_6490V3.1 (Pp3c26_6490)


Aliases : Pp3c26_6490

Description : Ribosomal RNA processing Brix domain protein


Gene families : OG0006885 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006885_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c26_6490V3.1

Target Alias Description ECC score Gene Family Method Actions
AT3G23620 No alias Ribosomal RNA processing Brix domain protein 0.01 OrthoFinder output from all 47 species
Lfl_g01275 No alias component *(ARPF2) of ARPF2-ARRS1 complex & original... 0.02 OrthoFinder output from all 47 species
MA_89741g0010 No alias component ARPF2 of ARPF2-ARRS1 complex 0.02 OrthoFinder output from all 47 species
Ppi_g59247 No alias component *(ARPF2) of ARPF2-ARRS1 complex & original... 0.01 OrthoFinder output from all 47 species
Sam_g11434 No alias component *(ARPF2) of ARPF2-ARRS1 complex & original... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 36 213
No external refs found!