1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c26_10520V3.1

Pp3c26_10520V3.1 (Pp3c26_10520)


Aliases : Pp3c26_10520

Description : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain


Gene families : OG0000432 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000432_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c26_10520V3.1
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
Aev_g25747 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16820 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g09159 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g21637 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g11149 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05710 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03426 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g08623 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003923001 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01027918001 No alias No description available 0.01 OrthoFinder output from all 47 species
Gb_32671 No alias mRNA endoribonuclease (G3BP) 0.02 OrthoFinder output from all 47 species
Gb_35692 No alias mRNA endoribonuclease (G3BP) 0.04 OrthoFinder output from all 47 species
LOC_Os04g30430.1 LOC_Os04g30430 mRNA endoribonuclease (G3BP) 0.01 OrthoFinder output from all 47 species
Len_g01806 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g21624 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.01 OrthoFinder output from all 47 species
MA_10429469g0010 No alias mRNA endoribonuclease (G3BP) 0.01 OrthoFinder output from all 47 species
MA_1896g0010 No alias mRNA endoribonuclease (G3BP) 0.02 OrthoFinder output from all 47 species
Mp4g17080.1 No alias mRNA endoribonuclease (G3BP) 0.01 OrthoFinder output from all 47 species
Msp_g05349 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02265 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0076.g017466 No alias mRNA endoribonuclease *(G3BP) & original description:... 0.01 OrthoFinder output from all 47 species
Sam_g08781 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.01 OrthoFinder output from all 47 species
Solyc06g083300.4.1 Solyc06g083300 mRNA endoribonuclease (G3BP) 0.05 OrthoFinder output from all 47 species
Solyc09g090940.3.1 Solyc09g090940 mRNA endoribonuclease (G3BP) 0.01 OrthoFinder output from all 47 species
Spa_g23025 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g53276 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05993 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e008436_P002 Zm00001e008436 mRNA endoribonuclease (G3BP) 0.02 OrthoFinder output from all 47 species
Zm00001e038048_P001 Zm00001e038048 mRNA endoribonuclease (G3BP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR002075 NTF2_dom 19 137
IPR000504 RRM_dom 315 381
No external refs found!