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  5. Mp8g09170.1

Mp8g09170.1


Description : component SRm160 of RNA quality control Exon Junction complex


Gene families : OG0003504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003504_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp8g09170.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00256890 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Adi_g019655 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g042058 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aob_g02107 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ceric.1Z098000.1 Ceric.1Z098000 component *(SRm160) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ceric.35G044600.1 Ceric.35G044600 component *(SRm160) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Dac_g18749 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g22461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g46327 No alias component *(SRm160) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Dde_g23077 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024906001 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 OrthoFinder output from all 47 species
Gb_33063 No alias component SRm160 of RNA quality control Exon Junction complex 0.06 OrthoFinder output from all 47 species
MA_1065g0010 No alias component SRm160 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Pir_g54700 No alias component *(SRm160) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Pnu_g17589 No alias component *(SRm160) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026743 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Smo100233 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Solyc09g030390.3.1 Solyc09g030390 component SRm160 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Tin_g23972 No alias component *(SRm160) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Zm00001e001194_P001 Zm00001e001194 component SRm160 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
CC GO:0000124 SAGA complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
CC GO:0070461 SAGA-type complex IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002483 PWI_dom 46 114
No external refs found!