Mp8g04520.1 (EDD, EDD1)

Aliases : EDD, EDD1

Description : glycine-tRNA ligase

Gene families : OG0005277 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005277_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp8g04520.1
Cluster	HCCA: Cluster_50

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00111p00138070	EDD, EDD1,...	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.03	OrthoFinder output from all 47 species
Adi_g015460	EDD, EDD1	glycine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g02635	EDD, EDD1	glycine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g13774	EDD, EDD1	glycine-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g13775	EDD, EDD1	glycine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0472.g072933	EDD, EDD1	glycine-tRNA ligase & original description: CDS=154-3516	0.07	OrthoFinder output from all 47 species
Cba_g05311	EDD, EDD1	glycine-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.32G004800.1	EDD, EDD1,...	glycine-tRNA ligase & original description:...	0.09	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001466.1	EDD, EDD1	Glycine--tRNA ligase, chloroplastic/mitochondrial 2...	0.03	OrthoFinder output from all 47 species
Cre10.g433000	EDD, EDD1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.09	OrthoFinder output from all 47 species
Dac_g18159	EDD, EDD1	glycine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g01951	EDD, EDD1	glycine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g21151	EDD, EDD1	glycine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01018288001	EDD, EDD1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Gb_13783	EDD, EDD1	glycine-tRNA ligase	0.03	OrthoFinder output from all 47 species
LOC_Os06g01400.1	EDD, EDD1, LOC_Os06g01400	glycine-tRNA ligase	0.06	OrthoFinder output from all 47 species
Len_g07793	EDD, EDD1	glycine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g11421	EDD, EDD1	glycine-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
MA_69123g0010	EDD, EDD1	Glycine--tRNA ligase, chloroplastic/mitochondrial 2...	0.02	OrthoFinder output from all 47 species
Nbi_g18283	EDD, EDD1	glycine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g14304	EDD, EDD1	glycine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g49402	EDD, EDD1	glycine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013857	EDD, EDD1	EC_1.14 oxidoreductase acting on paired donor with...	0.03	OrthoFinder output from all 47 species
Sam_g25103	No alias	glycine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g17234	EDD, EDD1	glycine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g10042	EDD, EDD1	glycine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	None	Extended
MF	GO:0004820	glycine-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006426	glycyl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004556	alpha-amylase activity	IEP	HCCA
MF	GO:0016160	amylase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002310	Gly-tRNA_ligase_asu	120	397
IPR015944	Gly-tRNA-synth_bsu	430	976

External Links

No external refs found!

Mp8g04520.1 (EDD, EDD1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation