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  5. Mp6g19820.1

Mp6g19820.1


Description : 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea (sp|p29344|rr1_spiol : 88.6)


Gene families : OG0006499 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006499_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g19820.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00020p00012640 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.05 OrthoFinder output from all 47 species
AT3G23700 No alias Nucleic acid-binding proteins superfamily 0.04 OrthoFinder output from all 47 species
Adi_g001996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04569 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g08286 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g01702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g27368 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene14361.t1 Aspi01Gene14361 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0534.g076070 No alias not classified & original description: CDS=250-1461 0.03 OrthoFinder output from all 47 species
Cba_g16549 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.11G080900.1 Ceric.11G080900 not classified & original description: pacid=50596374... 0.08 OrthoFinder output from all 47 species
Cre03.g148950 No alias 30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g02753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03799 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g07957 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g01039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031632001 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.04 OrthoFinder output from all 47 species
Gb_13624 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.07 OrthoFinder output from all 47 species
LOC_Os03g62780.1 LOC_Os03g62780 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g12635 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g01511 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_37826g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g04843 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g02820 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40824 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12492 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05108 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0160.g023855 No alias not classified & original description: CDS=194-1321 0.02 OrthoFinder output from all 47 species
Sam_g30081 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo96268 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.05 OrthoFinder output from all 47 species
Spa_g11144 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g18988 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g23785 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004820 glycine-tRNA ligase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006426 glycyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 144 220
IPR003029 S1_domain 234 310
No external refs found!