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  5. Mp4g01470.1

Mp4g01470.1 (ISE2, PDE317, EMB25)


Aliases : ISE2, PDE317, EMB25

Description : RNA helicase (ISE2)


Gene families : OG0004771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004771_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g01470.1
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00178540 ISE2, PDE317,... RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
AT1G70070 ISE2, PDE317, EMB25 DEAD/DEAH box helicase, putative 0.07 OrthoFinder output from all 47 species
Adi_g024948 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.01 OrthoFinder output from all 47 species
Aev_g25423 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.02 OrthoFinder output from all 47 species
Ala_g22694 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.05 OrthoFinder output from all 47 species
Als_g16449 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.02 OrthoFinder output from all 47 species
Aop_g13240 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007647 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.07 OrthoFinder output from all 47 species
Ceric.18G021200.1 ISE2, PDE317,... group-II intron splicing RNA helicase *(ISE2) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g20011 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.06 OrthoFinder output from all 47 species
Dde_g08182 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g05098 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01020137001 ISE2, PDE317, EMB25 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Gb_35993 ISE2, PDE317, EMB25 RNA helicase (ISE2) 0.06 OrthoFinder output from all 47 species
LOC_Os02g50560.1 ISE2, PDE317,... RNA helicase (ISE2) 0.08 OrthoFinder output from all 47 species
Lfl_g12767 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
MA_10437000g0020 ISE2, PDE317, EMB25 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic... 0.06 OrthoFinder output from all 47 species
MA_1283g0010 ISE2, PDE317, EMB25 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic... 0.04 OrthoFinder output from all 47 species
Nbi_g18791 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.06 OrthoFinder output from all 47 species
Ore_g19053 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Pir_g14171 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.05 OrthoFinder output from all 47 species
Pnu_g09563 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g08266 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.06 OrthoFinder output from all 47 species
Smo440019 ISE2, PDE317, EMB25 Protein modification.phosphorylation.TKL kinase... 0.04 OrthoFinder output from all 47 species
Solyc05g006530.4.1 ISE2, PDE317,... RNA helicase (ISE2) 0.02 OrthoFinder output from all 47 species
Tin_g12272 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e015769_P001 ISE2, PDE317,... RNA helicase (ISE2) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004820 glycine-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006426 glycyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 421 574
IPR012961 Ski2/MTR4_C 1263 1428
No external refs found!