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  5. Mp3g10830.1

Mp3g10830.1 (emb2746)


Aliases : emb2746

Description : exo-/endoribonuclease (RNase J)


Gene families : OG0003970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003970_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g10830.1
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00241540 emb2746,... RNA processing.organelle machineries.ribonuclease... 0.06 OrthoFinder output from all 47 species
AT5G63420 emb2746 RNA-metabolising metallo-beta-lactamase family protein 0.09 OrthoFinder output from all 47 species
Ala_g32457 emb2746 exoribonuclease *(RNase J) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g22857 emb2746 exoribonuclease *(RNase J) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11224 emb2746 exoribonuclease *(RNase J) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0392.g067768 emb2746 exoribonuclease *(RNase J) & original description: CDS=108-2618 0.02 OrthoFinder output from all 47 species
Ceric.02G090000.1 emb2746, Ceric.02G090000 exoribonuclease *(RNase J) & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g22106 emb2746 exoribonuclease *(RNase J) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02934 emb2746 exoribonuclease *(RNase J) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01008515001 emb2746 Vesicle trafficking.target membrane tethering.DSL1... 0.11 OrthoFinder output from all 47 species
Gb_26634 emb2746 exo-/endoribonuclease (RNase J) 0.07 OrthoFinder output from all 47 species
Gb_29169 emb2746 exo-/endoribonuclease (RNase J) 0.07 OrthoFinder output from all 47 species
LOC_Os02g33610.1 emb2746, LOC_Os02g33610 exo-/endoribonuclease (RNase J) 0.03 OrthoFinder output from all 47 species
Len_g08129 emb2746 exoribonuclease *(RNase J) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10429859g0010 emb2746 exo-/endoribonuclease (RNase J) 0.06 OrthoFinder output from all 47 species
MA_10430099g0010 emb2746 no description available(sp|q84w56|rnj_arath : 150.0) 0.04 OrthoFinder output from all 47 species
Msp_g15010 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25599 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40893 emb2746 exoribonuclease *(RNase J) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g04183 emb2746 exoribonuclease *(RNase J) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g18484 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c20_9790V3.1 emb2746, Pp3c20_9790 RNA-metabolising metallo-beta-lactamase family protein 0.01 OrthoFinder output from all 47 species
Ppi_g25090 emb2746 exoribonuclease *(RNase J) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012058 emb2746 exoribonuclease *(RNase J) & original description: CDS=64-2889 0.03 OrthoFinder output from all 47 species
Sam_g16311 No alias exoribonuclease *(RNase J) & original description: none 0.06 OrthoFinder output from all 47 species
Solyc03g111260.3.1 emb2746, Solyc03g111260 exo-/endoribonuclease (RNase J) 0.05 OrthoFinder output from all 47 species
Spa_g18551 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22135 emb2746 exoribonuclease *(RNase J) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013900_P001 emb2746, Zm00001e013900 exo-/endoribonuclease (RNase J) 0.11 OrthoFinder output from all 47 species
Zm00001e025070_P003 emb2746, Zm00001e025070 exo-/endoribonuclease (RNase J) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004817 cysteine-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006072 glycerol-3-phosphate metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046168 glycerol-3-phosphate catabolic process IEP HCCA
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
BP GO:0052646 alditol phosphate metabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001279 Metallo-B-lactamas 126 262
IPR011108 RMMBL 453 505
No external refs found!