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  5. Mp3g04100.1

Mp3g04100.1 (emb1011)


Aliases : emb1011

Description : cytoplasmic nucleoporin (NUP214). NUP214 nucleoporin of nuclear pore complex


Gene families : OG0003944 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003944_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g04100.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g018629 No alias nucleoporin of nuclear pore complex *(NUP214) & original... 0.03 OrthoFinder output from all 47 species
Adi_g084691 emb1011 nucleoporin of nuclear pore complex *(NUP214) & original... 0.04 OrthoFinder output from all 47 species
Aev_g17047 emb1011 nucleoporin of nuclear pore complex *(NUP214) & original... 0.05 OrthoFinder output from all 47 species
Ala_g15272 emb1011 nucleoporin of nuclear pore complex *(NUP214) & original... 0.03 OrthoFinder output from all 47 species
Als_g23019 emb1011 nucleoporin of nuclear pore complex *(NUP214) & original... 0.02 OrthoFinder output from all 47 species
Aop_g10649 No alias nucleoporin of nuclear pore complex *(NUP214) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene05038.t1 Aspi01Gene05038 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05041.t1 Aspi01Gene05041 nucleoporin of nuclear pore complex *(NUP214) & original... 0.02 OrthoFinder output from all 47 species
Cba_g25094 emb1011 nucleoporin of nuclear pore complex *(NUP214) & original... 0.01 OrthoFinder output from all 47 species
Ceric.34G008900.1 Ceric.34G008900 nucleoporin of nuclear pore complex *(NUP214) & original... 0.05 OrthoFinder output from all 47 species
Ceric.34G009300.1 emb1011, Ceric.34G009300 nucleoporin of nuclear pore complex *(NUP214) & original... 0.03 OrthoFinder output from all 47 species
Cre07.g313500 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Dac_g23346 No alias nucleoporin of nuclear pore complex *(NUP214) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g20625 emb1011 nucleoporin of nuclear pore complex *(NUP214) & original... 0.02 OrthoFinder output from all 47 species
Gb_08947 emb1011 cytoplasmic nucleoporin (NUP214). NUP214 nucleoporin of... 0.05 OrthoFinder output from all 47 species
Lfl_g03504 emb1011 nucleoporin of nuclear pore complex *(NUP214) & original... 0.03 OrthoFinder output from all 47 species
MA_31606g0010 emb1011 cytoplasmic nucleoporin (NUP214). NUP214 nucleoporin of... 0.03 OrthoFinder output from all 47 species
MA_903935g0010 No alias Nuclear pore complex protein NUP214 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Msp_g31844 No alias nucleoporin of nuclear pore complex *(NUP214) & original... 0.06 OrthoFinder output from all 47 species
Ore_g35913 emb1011 nucleoporin of nuclear pore complex *(NUP214) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g49241 No alias nucleoporin of nuclear pore complex *(NUP214) & original... 0.01 OrthoFinder output from all 47 species
Sam_g08100 No alias nucleoporin of nuclear pore complex *(NUP214) & original... 0.03 OrthoFinder output from all 47 species
Solyc02g032380.3.1 emb1011, Solyc02g032380 cytoplasmic nucleoporin (NUP214). NUP214 nucleoporin of... 0.08 OrthoFinder output from all 47 species
Solyc02g032450.3.1 emb1011, Solyc02g032450 cytoplasmic nucleoporin (NUP214). NUP214 nucleoporin of... 0.08 OrthoFinder output from all 47 species
Solyc02g032480.3.1 emb1011, Solyc02g032480 cytoplasmic nucleoporin (NUP214). NUP214 nucleoporin of... 0.04 OrthoFinder output from all 47 species
Solyc02g032490.3.1 emb1011, Solyc02g032490 Nuclear pore complex protein NUP214 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Tin_g11192 emb1011 nucleoporin of nuclear pore complex *(NUP214) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e035895_P006 emb1011, Zm00001e035895 cytoplasmic nucleoporin (NUP214). NUP214 nucleoporin of... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!