1. Home
  2. Species
  3. Marchantia polymorpha
  4. Sequence
  5. Mp2g04330.1

Mp2g04330.1


Description : PHD finger transcription factor


Gene families : OG0002837 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002837_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp2g04330.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00140p00029580 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.08 OrthoFinder output from all 47 species
AT2G36720 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.03 OrthoFinder output from all 47 species
Aev_g48839 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g15288 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene66261.t1 Aspi01Gene66261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66264.t1 Aspi01Gene66264 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g010193 No alias not classified & original description: CDS=461-4126 0.02 OrthoFinder output from all 47 species
Ceric.36G048800.1 Ceric.36G048800 not classified & original description: pacid=50568689... 0.04 OrthoFinder output from all 47 species
Ceric.36G053700.1 Ceric.36G053700 not classified & original description: pacid=50569216... 0.05 OrthoFinder output from all 47 species
Cre01.g018200 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.05 OrthoFinder output from all 47 species
Dcu_g12142 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01031451001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
GSVIVT01033711001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
Len_g08907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0161.g023919 No alias not classified & original description: CDS=862-4203 0.03 OrthoFinder output from all 47 species
Sam_g36826 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo437662 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc10g083800.2.1 Solyc10g083800 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e013368_P001 Zm00001e013368 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 1112 1154
IPR032308 TDBD 1016 1084
IPR032308 TDBD 838 900
No external refs found!