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  5. Mp2g04090.1

Mp2g04090.1


Description : Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea (sp|p10871|rca_spiol : 337.0)


Gene families : OG0005577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005577_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp2g04090.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AT1G73110 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Aev_g06596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16206 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72562.t1 Aspi01Gene72562 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0587.g078545 No alias not classified & original description: CDS=85-1572 0.02 OrthoFinder output from all 47 species
Cba_g13522 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.08G032500.1 Ceric.08G032500 not classified & original description: pacid=50638582... 0.06 OrthoFinder output from all 47 species
Dac_g14854 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g24022 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g18676 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01016062001 No alias Ribulose bisphosphate carboxylase/oxygenase activase,... 0.08 OrthoFinder output from all 47 species
LOC_Os04g56320.1 LOC_Os04g56320 Ribulose bisphosphate carboxylase/oxygenase activase 2,... 0.03 OrthoFinder output from all 47 species
Len_g50097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428784g0010 No alias Ribulose bisphosphate carboxylase/oxygenase activase,... 0.04 OrthoFinder output from all 47 species
MA_379291g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g02450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06629 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07975 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g58392 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020487 No alias not classified & original description: CDS=305-1777 0.03 OrthoFinder output from all 47 species
Sam_g29423 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g117850.4.1 Solyc03g117850 Ribulose bisphosphate carboxylase/oxygenase activase,... 0.05 OrthoFinder output from all 47 species
Tin_g21285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 221 363
No external refs found!