Mp1g28660.1


Description : ndhA-specific mRNA splicing factor. plastidial RNA processing factor (PPR287)


Gene families : OG0007004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007004_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g28660.1
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00172780 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.02 OrthoFinder output from all 47 species
AT2G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 OrthoFinder output from all 47 species
Aev_g19823 No alias plastidial RNA processing factor *(PPR287) & original... 0.04 OrthoFinder output from all 47 species
Ala_g26348 No alias ndhA-specific mRNA splicing factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g09698 No alias ndhA-specific mRNA splicing factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene35119.t1 Aspi01Gene35119 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026506 No alias plastidial RNA processing factor *(PPR287) & original... 0.02 OrthoFinder output from all 47 species
Cba_g11391 No alias plastidial RNA processing factor *(PPR287) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g12037 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012065001 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.05 OrthoFinder output from all 47 species
Gb_35563 No alias ndhA-specific mRNA splicing factor 0.02 OrthoFinder output from all 47 species
LOC_Os02g07360.1 LOC_Os02g07360 ndhA-specific mRNA splicing factor. plastidial RNA... 0.06 OrthoFinder output from all 47 species
Pnu_g20465 No alias plastidial RNA processing factor *(PPR287) & original... 0.05 OrthoFinder output from all 47 species
Ppi_g17511 No alias ndhA-specific mRNA splicing factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo109632 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.05 OrthoFinder output from all 47 species
Solyc02g068760.4.1 Solyc02g068760 ndhA-specific mRNA splicing factor 0.04 OrthoFinder output from all 47 species
Spa_g07815 No alias plastidial RNA processing factor *(PPR287) & original... 0.02 OrthoFinder output from all 47 species
Tin_g13021 No alias ndhA-specific mRNA splicing factor & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004565 beta-galactosidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0009341 beta-galactosidase complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015925 galactosidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 454 481
IPR002885 Pentatricopeptide_repeat 175 202
IPR033443 PPR_long 212 356
IPR002885 Pentatricopeptide_repeat 381 429
IPR002885 Pentatricopeptide_repeat 487 536
No external refs found!