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  5. Zm00001e041970_P002

Zm00001e041970_P002 (Zm00001e041970)


Aliases : Zm00001e041970

Description : Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana (sp|q0wmy5|pp365_arath : 998.0)


Gene families : OG0007144 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007144_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e041970_P002

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00239430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species
AT5G04810 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 OrthoFinder output from all 47 species
Adi_g059076 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42769 No alias trans-splicing factor *(PPR4) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06743 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0073.g037201 No alias trans-splicing factor *(PPR4) & original description:... 0.05 OrthoFinder output from all 47 species
Cba_g14938 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.23G051700.1 Ceric.23G051700 trans-splicing factor *(PPR4) & original description:... 0.11 OrthoFinder output from all 47 species
GSVIVT01034651001 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.07 OrthoFinder output from all 47 species
Gb_31760 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species
LOC_Os04g58780.1 LOC_Os04g58780 Pentatricopeptide repeat-containing protein At5g04810,... 0.08 OrthoFinder output from all 47 species
Lfl_g07399 No alias trans-splicing factor *(PPR4) & original description: none 0.09 OrthoFinder output from all 47 species
MA_10434757g0010 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.04 OrthoFinder output from all 47 species
MA_70567g0010 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.05 OrthoFinder output from all 47 species
Mp1g25160.1 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.02 OrthoFinder output from all 47 species
Msp_g06326 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04509 No alias trans-splicing factor *(PPR4) & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g08436 No alias trans-splicing factor *(PPR4) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g09198 No alias trans-splicing factor *(PPR4) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g009730.4.1 Solyc04g009730 Pentatricopeptide repeat-containing protein At5g04810,... 0.04 OrthoFinder output from all 47 species
Solyc11g006680.3.1 Solyc11g006680 Pentatricopeptide repeat-containing protein At5g04810,... 0.14 OrthoFinder output from all 47 species
Spa_g27232 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 109 181
IPR002885 Pentatricopeptide_repeat 274 333
IPR002885 Pentatricopeptide_repeat 564 612
IPR002885 Pentatricopeptide_repeat 494 542
IPR002885 Pentatricopeptide_repeat 424 471
IPR002885 Pentatricopeptide_repeat 393 422
IPR033443 PPR_long 615 783
IPR002885 Pentatricopeptide_repeat 355 383
No external refs found!