1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e039565_P001

Zm00001e039565_P001 (ATGCN1, GCN1, Zm00001e039565)


Aliases : ATGCN1, GCN1, Zm00001e039565

Description : ABC transporter F family member 1 OS=Arabidopsis thaliana (sp|q9fjh6|ab1f_arath : 949.0)


Gene families : OG0003164 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003164_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e039565_P001
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00176080 ATGCN1, GCN1,... ABC transporter F family member 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g000508 ATGCN1, GCN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117578 ATGCN1, GCN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05138 ATGCN1, GCN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g01954 ATGCN1, GCN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo154355 ATGCN1, GCN1 ABC transporter F family member 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Zm00001e017809_P001 ATGCN1, GCN1,... ABC transporter F family member 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032781 ABC_tran_Xtn 282 354
IPR003439 ABC_transporter-like_ATP-bd 399 529
IPR003439 ABC_transporter-like_ATP-bd 89 243
No external refs found!