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  5. Zm00001e035455_P001

Zm00001e035455_P001 (ATMSH2, MSH2, Zm00001e035455)


Aliases : ATMSH2, MSH2, Zm00001e035455

Description : component MSH2 of MSH2-x mismatch repair heterodimers


Gene families : OG0004193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035455_P001
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00236950 ATMSH2, MSH2,... DNA damage response.DNA repair mechanisms.mismatch... 0.02 OrthoFinder output from all 47 species
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 0.03 OrthoFinder output from all 47 species
Ala_g02570 ATMSH2, MSH2 component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
Als_g31821 ATMSH2, MSH2 component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.04 OrthoFinder output from all 47 species
Azfi_s0181.g056368 ATMSH2, MSH2 component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Ceric.01G010000.1 ATMSH2, MSH2,... component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001224.8 ATMSH2, MSH2 DNA damage response.DNA repair mechanisms.mismatch... 0.04 OrthoFinder output from all 47 species
Cre01.g003463 ATMSH2, MSH2 DNA mismatch repair protein MSH2 OS=Zea mays 0.05 OrthoFinder output from all 47 species
Dcu_g04076 ATMSH2, MSH2 component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
GSVIVT01008235001 ATMSH2, MSH2 DNA damage response.DNA repair mechanisms.mismatch... 0.02 OrthoFinder output from all 47 species
Gb_33909 ATMSH2, MSH2 component MSH2 of MSH2-x mismatch repair heterodimers 0.02 OrthoFinder output from all 47 species
LOC_Os05g19270.1 ATMSH2, MSH2,... component MSH2 of MSH2-x mismatch repair heterodimers 0.03 OrthoFinder output from all 47 species
MA_10431416g0010 ATMSH2, MSH2 DNA mismatch repair protein MSH2 OS=Zea mays... 0.05 OrthoFinder output from all 47 species
MA_59360g0010 ATMSH2, MSH2 component MSH2 of MSH2-x mismatch repair heterodimers 0.06 OrthoFinder output from all 47 species
MA_60574g0010 No alias DNA mismatch repair protein MSH2 OS=Zea mays... 0.03 OrthoFinder output from all 47 species
Mp4g08420.1 ATMSH2, MSH2 component MSH2 of MSH2-x mismatch repair heterodimers 0.07 OrthoFinder output from all 47 species
Msp_g13403 ATMSH2, MSH2 component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Ppi_g12971 ATMSH2, MSH2 component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009413 ATMSH2, MSH2 component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
Solyc06g069230.3.1 ATMSH2, MSH2,... component MSH2 of MSH2-x mismatch repair heterodimers 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR007860 DNA_mmatch_repair_MutS_con_dom 145 285
IPR007695 DNA_mismatch_repair_MutS-lik_N 25 130
IPR007861 DNA_mismatch_repair_MutS_clamp 471 564
IPR000432 DNA_mismatch_repair_MutS_C 663 861
IPR007696 DNA_mismatch_repair_MutS_core 302 607
No external refs found!