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  5. Zm00001e032889_P001

Zm00001e032889_P001 (RIF10, PNP, Zm00001e032889)


Aliases : RIF10, PNP, Zm00001e032889

Description : polynucleotide phosphorylase (PNP)


Gene families : OG0002534 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002534_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032889_P001
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00095690 RIF10, PNP,... RNA processing.organelle machineries.ribonuclease... 0.09 OrthoFinder output from all 47 species
AMTR_s00113p00140210 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
AT3G03710 RIF10, PNP polyribonucleotide nucleotidyltransferase, putative 0.18 OrthoFinder output from all 47 species
Adi_g021889 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.07 OrthoFinder output from all 47 species
Aev_g14980 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species
Ala_g20124 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.06 OrthoFinder output from all 47 species
Aop_g10994 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.09 OrthoFinder output from all 47 species
Cba_g07917 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.07 OrthoFinder output from all 47 species
Ceric.07G039700.1 RIF10, PNP,... EC_2.7 transferase transferring phosphorus-containing... 0.14 OrthoFinder output from all 47 species
Dcu_g47719 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.06 OrthoFinder output from all 47 species
Dde_g30979 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.06 OrthoFinder output from all 47 species
Ehy_g15453 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
GSVIVT01029958001 RIF10, PNP RNA processing.organelle machineries.ribonuclease... 0.11 OrthoFinder output from all 47 species
GSVIVT01032436001 No alias RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
Gb_15670 RIF10, PNP polynucleotide phosphorylase (PNP) 0.06 OrthoFinder output from all 47 species
Len_g23960 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.06 OrthoFinder output from all 47 species
Lfl_g17615 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.13 OrthoFinder output from all 47 species
Mp4g17520.1 RIF10, PNP polynucleotide phosphorylase (PNP) 0.11 OrthoFinder output from all 47 species
Msp_g13904 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Nbi_g07092 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Nbi_g09693 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species
Ore_g20554 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.07 OrthoFinder output from all 47 species
Pir_g13596 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
Pnu_g07843 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Ppi_g15192 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species
Sam_g15795 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Smo77425 RIF10, PNP RNA processing.organelle machineries.ribonuclease... 0.06 OrthoFinder output from all 47 species
Solyc08g066120.4.1 RIF10, PNP,... polynucleotide phosphorylase (PNP) 0.06 OrthoFinder output from all 47 species
Spa_g04595 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.06 OrthoFinder output from all 47 species
Tin_g26292 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 216 276
IPR004088 KH_dom_type_1 678 730
IPR003029 S1_domain 742 811
IPR001247 ExoRNase_PH_dom1 437 571
IPR001247 ExoRNase_PH_dom1 81 211
No external refs found!