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  5. Zm00001e031418_P004

Zm00001e031418_P004 (At-SR34, SRP34,...)


Aliases : At-SR34, SRP34, ATSRP34, SR34, SR1, Zm00001e031418

Description : SR30/34 RNA splicing factor


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e031418_P004

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00217480 SR30, ATSRP30,... RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Adi_g012564 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018175 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g112402 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12937 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0197.g057374 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: CDS=1-1167 0.03 OrthoFinder output from all 47 species
Azfi_s0241.g059740 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.23G039200.1 At-SR34a, SR34a,... RNA splicing factor *(SR30/34) & original description:... 0.04 OrthoFinder output from all 47 species
Cre01.g026450 At-SR34, SRP34,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Dac_g12144 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36549 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
Gb_20155 SR30, ATSRP30, At-SR30 SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os03g22380.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.04 OrthoFinder output from all 47 species
MA_11621g0010 At-SR34a, SR34a, SRp34a SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
MA_141465g0010 SR30, ATSRP30, At-SR30 SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Nbi_g31228 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018025 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: CDS=14-880 0.03 OrthoFinder output from all 47 species
Solyc09g075090.1.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.04 OrthoFinder output from all 47 species
Spa_g17256 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30637 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004140 dephospho-CoA kinase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015936 coenzyme A metabolic process IEP HCCA
BP GO:0015937 coenzyme A biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030289 protein phosphatase 4 complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 111 173
IPR000504 RRM_dom 9 76
No external refs found!