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  5. Zm00001e030938_P001

Zm00001e030938_P001 (PKDM7D, Zm00001e030938)


Aliases : PKDM7D, Zm00001e030938

Description : histone demethylase (PKDM7). transcription factor (JUMONJI)


Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030938_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 OrthoFinder output from all 47 species
AMTR_s00067p00062020 PKDM7D,... RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 OrthoFinder output from all 47 species
AMTR_s00092p00144240 PKDM7D,... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 OrthoFinder output from all 47 species
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.12 OrthoFinder output from all 47 species
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.06 OrthoFinder output from all 47 species
AT4G20400 PKDM7B, JMJ14 JUMONJI 14 0.03 OrthoFinder output from all 47 species
Adi_g042525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055868 No alias histone demethylase *(KDM5) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g107372 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g15008 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46750 PKDM7D histone demethylase *(PKDM7) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g08112 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05144 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13634 PKDM7D histone demethylase *(PKDM7) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g17236 No alias histone demethylase *(KDM5) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene28386.t1 Aspi01Gene28386 histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68630.t1 PKDM7D, Aspi01Gene68630 histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000131 PKDM7D histone demethylase *(PKDM7) & original description: CDS=166-5457 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024633 PKDM7D histone demethylase *(PKDM7) & original description: CDS=1-3693 0.03 OrthoFinder output from all 47 species
Ceric.01G024900.1 Ceric.01G024900 histone demethylase *(KDM5) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.09G000100.1 PKDM7D, Ceric.09G000100 histone demethylase *(PKDM7) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.28G058700.1 PKDM7D, Ceric.28G058700 histone demethylase *(PKDM7) & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g05827 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07179 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14428 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21854 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21285 PKDM7B, JMJ14 histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.07 OrthoFinder output from all 47 species
GSVIVT01023517001 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.09 OrthoFinder output from all 47 species
GSVIVT01037956001 PKDM7B, JMJ14 RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 OrthoFinder output from all 47 species
Gb_27431 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.06 OrthoFinder output from all 47 species
Len_g14189 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18977 PKDM7D histone demethylase *(PKDM7) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g04280 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04296 No alias histone demethylase *(KDM5) & original description: none 0.07 OrthoFinder output from all 47 species
MA_10434186g0010 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.05 OrthoFinder output from all 47 species
MA_10436180g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_11526g0010 No alias Putative lysine-specific demethylase JMJ16... 0.02 OrthoFinder output from all 47 species
MA_91656g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp6g20340.1 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.07 OrthoFinder output from all 47 species
Msp_g13349 No alias histone demethylase *(KDM5) & original description: none 0.11 OrthoFinder output from all 47 species
Msp_g43538 PKDM7D not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02485 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38705 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15994 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g29562 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58500 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013848 No alias histone demethylase *(KDM5) & original description: CDS=319-5874 0.04 OrthoFinder output from all 47 species
Sam_g11634 No alias histone demethylase *(KDM5) & original description: none 0.07 OrthoFinder output from all 47 species
Solyc08g081000.3.1 Solyc08g081000 histone demethylase (KDM5). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
Spa_g17545 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g12700 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003347 JmjC_dom 388 504
IPR003888 FYrich_N 1032 1075
IPR003889 FYrich_C 1082 1169
IPR004198 Znf_C5HC2 610 660
IPR003349 JmjN 164 197
No external refs found!