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  5. Zm00001e029078_P002

Zm00001e029078_P002 (LOS1, Zm00001e029078)


Aliases : LOS1, Zm00001e029078

Description : mRNA-translocation factor (eEF2)


Gene families : OG0001393 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001393_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Zm00001e029078_P002
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00133570 LOS1,... Protein biosynthesis.translation elongation.eEF2... 0.12 OrthoFinder output from all 47 species
AT1G56070 LOS1 Ribosomal protein S5/Elongation factor G/III/V family protein 0.19 OrthoFinder output from all 47 species
Als_g14719 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.25G007600.1 LOS1, Ceric.25G007600 mRNA-translocation factor *(eEF2)) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021464.39 LOS1 Protein biosynthesis.translation elongation.eEF2... 0.01 OrthoFinder output from all 47 species
Cre12.g516200 LOS1 Protein biosynthesis.translation elongation.eEF2... 0.01 OrthoFinder output from all 47 species
GSVIVT01020404001 LOS1 Elongation factor 2 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
LOC_Os04g02820.1 LOS1, LOC_Os04g02820 mRNA-translocation factor (eEF2) 0.14 OrthoFinder output from all 47 species
Lfl_g06654 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10426758g0020 LOS1 Elongation factor 2 OS=Beta vulgaris... 0.03 OrthoFinder output from all 47 species
Mp2g20190.1 LOS1 mRNA-translocation factor (eEF2) 0.05 OrthoFinder output from all 47 species
Mp2g20200.1 LOS1 mRNA-translocation factor (eEF2) 0.05 OrthoFinder output from all 47 species
Msp_g08640 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c11_25350V3.1 LOS1, Pp3c11_25350 Ribosomal protein S5/Elongation factor G/III/V family protein 0.01 OrthoFinder output from all 47 species
Pp3c7_1950V3.1 LOS1, Pp3c7_1950 Ribosomal protein S5/Elongation factor G/III/V family protein 0.04 OrthoFinder output from all 47 species
Sam_g38282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49446 No alias mRNA-translocation factor *(eEF2)) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc08g062910.4.1 LOS1, Solyc08g062910 mRNA-translocation factor (eEF2) 0.11 OrthoFinder output from all 47 species
Solyc08g062920.3.1 LOS1, Solyc08g062920 mRNA-translocation factor (eEF2) 0.09 OrthoFinder output from all 47 species
Spa_g06405 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g06406 LOS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26568 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56829 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g21523 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000795 T_Tr_GTP-bd_dom 18 342
IPR000640 EFG_V-like 724 811
IPR005517 Transl_elong_EFG/EF2_IV 611 722
IPR004161 EFTu-like_2 394 467
IPR041095 EFG_II 487 549
No external refs found!