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  5. Zm00001e018725_P004

Zm00001e018725_P004 (LD, Zm00001e018725)


Aliases : LD, Zm00001e018725

Description : transcription factor (LD)


Gene families : OG0006989 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006989_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e018725_P004
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
Adi_g104695 LD flowering time factor *(LD) & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g18967 LD regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ala_g25551 LD flowering time factor *(LD) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g17093 LD flowering time factor *(LD) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17620 LD flowering time factor *(LD) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010967001 LD RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
LOC_Os01g70810.1 LD, LOC_Os01g70810 transcription factor (LD) 0.09 OrthoFinder output from all 47 species
Len_g02925 LD flowering time factor *(LD) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g02445 LD flowering time factor *(LD) & original description: none 0.1 OrthoFinder output from all 47 species
Mp5g13160.1 LD transcription factor (LD). C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Msp_g14684 LD flowering time factor *(LD) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27547 LD flowering time factor *(LD) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18899 LD flowering time factor *(LD) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02417 LD flowering time factor *(LD) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013976 LD flowering time factor *(LD) & original description: CDS=188-3766 0.03 OrthoFinder output from all 47 species
Sam_g26577 No alias flowering time factor *(LD) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g074730.3.1 LD, Solyc09g074730 transcription factor (LD) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!