1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e016914_P004

Zm00001e016914_P004 (PRT6, Zm00001e016914)


Aliases : PRT6, Zm00001e016914

Description : type-I-residues E3 ubiquitin ligase (PRT6)


Gene families : OG0003565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003565_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016914_P004
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00210330 PRT6,... Protein degradation.N-end rule pathway of targeted... 0.04 OrthoFinder output from all 47 species
AT5G02310 PRT6 proteolysis 6 0.17 OrthoFinder output from all 47 species
Adi_g020061 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.03 OrthoFinder output from all 47 species
Aev_g08637 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.03 OrthoFinder output from all 47 species
Aev_g10474 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.06 OrthoFinder output from all 47 species
Aev_g44805 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.06 OrthoFinder output from all 47 species
Ala_g11391 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.09 OrthoFinder output from all 47 species
Als_g05145 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.07 OrthoFinder output from all 47 species
Aob_g27314 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene63013.t1 PRT6, Aspi01Gene63013 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene63015.t1 PRT6, Aspi01Gene63015 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67141.t1 PRT6, Aspi01Gene67141 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0022.g015984 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.05 OrthoFinder output from all 47 species
Cba_g16317 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.02 OrthoFinder output from all 47 species
Ceric.29G053500.1 PRT6, Ceric.29G053500 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.07 OrthoFinder output from all 47 species
Ceric.32G041800.1 PRT6, Ceric.32G041800 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.06 OrthoFinder output from all 47 species
Ceric.32G042600.1 PRT6, Ceric.32G042600 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001107.13 PRT6 Protein degradation.N-end rule pathway of targeted... 0.02 OrthoFinder output from all 47 species
Cre02.g089237 PRT6 Protein degradation.N-end rule pathway of targeted... 0.02 OrthoFinder output from all 47 species
Dcu_g37411 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.11 OrthoFinder output from all 47 species
Ehy_g10040 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01034167001 PRT6 E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
GSVIVT01034169001 PRT6 Protein degradation.N-end rule pathway of targeted... 0.1 OrthoFinder output from all 47 species
Gb_11947 PRT6 type-I-residues E3 ubiquitin ligase (PRT6) 0.08 OrthoFinder output from all 47 species
LOC_Os01g05500.2 PRT6, LOC_Os01g05500 type-I-residues E3 ubiquitin ligase (PRT6) 0.11 OrthoFinder output from all 47 species
Len_g57965 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g04298 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.1 OrthoFinder output from all 47 species
MA_10429079g0010 PRT6 E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
MA_10429118g0010 PRT6 type-I-residues E3 ubiquitin ligase (PRT6) 0.1 OrthoFinder output from all 47 species
MA_387g0010 PRT6 type-I-residues E3 ubiquitin ligase (PRT6) 0.09 OrthoFinder output from all 47 species
MA_767141g0010 PRT6 E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Mp7g16320.1 PRT6 type-I-residues E3 ubiquitin ligase (PRT6) 0.11 OrthoFinder output from all 47 species
Msp_g15711 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.05 OrthoFinder output from all 47 species
Nbi_g12851 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.02 OrthoFinder output from all 47 species
Ore_g13164 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16132 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021264 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.08 OrthoFinder output from all 47 species
Sam_g18069 No alias type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.06 OrthoFinder output from all 47 species
Smo438209 PRT6 Protein degradation.N-end rule pathway of targeted... 0.06 OrthoFinder output from all 47 species
Solyc09g010830.4.1 PRT6, Solyc09g010830 type-I-residues E3 ubiquitin ligase (PRT6) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003126 Znf_UBR 124 190
No external refs found!