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  5. Zm00001e016261_P001

Zm00001e016261_P001 (Zm00001e016261)


Aliases : Zm00001e016261

Description : DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica (sp|q6k7r9|rh48_orysj : 1141.0)


Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016261_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00261910 evm_27.TU.AmTr_v1... Probable DEAD-box ATP-dependent RNA helicase 48... 0.02 OrthoFinder output from all 47 species
AMTR_s00107p00082420 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G63250 No alias DEA(D/H)-box RNA helicase family protein 0.06 OrthoFinder output from all 47 species
AT5G08610 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
AT5G08620 ATRH25, STRS2 DEA(D/H)-box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g059684 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102498 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113230 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0009.g011827 No alias mRNA helicase *(RH31) & original description: CDS=535-2991 0.04 OrthoFinder output from all 47 species
Azfi_s0205.g057731 No alias mRNA helicase *(RH31) & original description: CDS=150-1823 0.03 OrthoFinder output from all 47 species
Cba_g15777 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001224.23 No alias DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g12157 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06438 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13098 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50517 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019804001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.1 OrthoFinder output from all 47 species
GSVIVT01027084001 No alias DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_09254 No alias DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os02g57980.1 LOC_Os02g57980 DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
LOC_Os06g33520.1 LOC_Os06g33520 DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Len_g51004 ATRH25, STRS2 mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10432294g0010 No alias DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp7g07740.1 No alias Probable DEAD-box ATP-dependent RNA helicase 48... 0.03 OrthoFinder output from all 47 species
Msp_g08017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g20600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30280 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53381 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020193 No alias group-II intron splicing RNA helicase *(ISE2) & original... 0.02 OrthoFinder output from all 47 species
Sam_g13628 No alias mRNA helicase *(RH31) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g34517 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc12g056340.2.1 Solyc12g056340 Probable DEAD-box ATP-dependent RNA helicase 48... 0.06 OrthoFinder output from all 47 species
Tin_g12179 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006188 IMP biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016842 amidine-lyase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046040 IMP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 596 701
IPR011545 DEAD/DEAH_box_helicase_dom 374 551
No external refs found!