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  5. Zm00001e012524_P001

Zm00001e012524_P001 (EMB2016, Zm00001e012524)


Aliases : EMB2016, Zm00001e012524

Description : regulatory component VIR of adenosine N6-methyltransferase complex


Gene families : OG0007626 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e012524_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00079350 EMB2016,... RNA processing.RNA modification.mRNA... 0.08 OrthoFinder output from all 47 species
AT3G05680 EMB2016 embryo defective 2016 0.12 OrthoFinder output from all 47 species
Adi_g117188 EMB2016 regulatory component *(VIR) of adenosine... 0.06 OrthoFinder output from all 47 species
Aev_g20810 EMB2016 regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
Ala_g07640 EMB2016 regulatory component *(VIR) of adenosine... 0.08 OrthoFinder output from all 47 species
Als_g16425 EMB2016 regulatory component *(VIR) of adenosine... 0.05 OrthoFinder output from all 47 species
Aop_g09034 EMB2016 regulatory component *(VIR) of adenosine... 0.04 OrthoFinder output from all 47 species
Aspi01Gene70940.t1 EMB2016, Aspi01Gene70940 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70941.t1 EMB2016, Aspi01Gene70941 regulatory component *(VIR) of adenosine... 0.02 OrthoFinder output from all 47 species
Aspi01Gene70942.t1 EMB2016, Aspi01Gene70942 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.09G038400.1 EMB2016, Ceric.09G038400 regulatory component *(VIR) of adenosine... 0.06 OrthoFinder output from all 47 species
Dac_g17125 EMB2016 regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
Dcu_g34300 EMB2016 regulatory component *(VIR) of adenosine... 0.11 OrthoFinder output from all 47 species
Dde_g39555 EMB2016 regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
GSVIVT01020162001 EMB2016 RNA processing.RNA modification.mRNA... 0.11 OrthoFinder output from all 47 species
Gb_24781 EMB2016 regulatory component VIR of adenosine... 0.04 OrthoFinder output from all 47 species
LOC_Os03g35340.1 EMB2016, LOC_Os03g35340 regulatory component VIR of adenosine... 0.08 OrthoFinder output from all 47 species
Len_g19134 EMB2016 regulatory component *(VIR) of adenosine... 0.05 OrthoFinder output from all 47 species
Lfl_g12938 EMB2016 regulatory component *(VIR) of adenosine... 0.07 OrthoFinder output from all 47 species
MA_5836g0010 EMB2016 regulatory component VIR of adenosine... 0.05 OrthoFinder output from all 47 species
Mp1g10290.1 EMB2016 regulatory component VIR of adenosine... 0.02 OrthoFinder output from all 47 species
Msp_g13667 EMB2016 regulatory component *(VIR) of adenosine... 0.12 OrthoFinder output from all 47 species
Ore_g19695 EMB2016 regulatory component *(VIR) of adenosine... 0.05 OrthoFinder output from all 47 species
Ppi_g08793 EMB2016 regulatory component *(VIR) of adenosine... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010851 EMB2016 regulatory component *(VIR) of adenosine... 0.05 OrthoFinder output from all 47 species
Sam_g18026 No alias regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
Solyc03g020020.3.1 EMB2016, Solyc03g020020 regulatory component VIR of adenosine... 0.08 OrthoFinder output from all 47 species
Spa_g21962 EMB2016 regulatory component *(VIR) of adenosine... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR031801 VIR_N 8 121
No external refs found!