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  5. Zm00001e011815_P001

Zm00001e011815_P001 (Zm00001e011815)


Aliases : Zm00001e011815

Description : RbcX assembly factor involved in RuBisCo assembly


Gene families : OG0005102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011815_P001
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Aev_g05175 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Aob_g25994 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.07 OrthoFinder output from all 47 species
Aop_g00191 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0262.g060824 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Cba_g46690 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Ceric.33G059700.1 Ceric.33G059700 assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021537.55 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g08983 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.05 OrthoFinder output from all 47 species
Dcu_g04377 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.02 OrthoFinder output from all 47 species
Gb_02160 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_02161 No alias RbcX assembly factor involved in RuBisCo assembly 0.06 OrthoFinder output from all 47 species
Gb_25793 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_25794 No alias RbcX assembly factor involved in RuBisCo assembly 0.03 OrthoFinder output from all 47 species
LOC_Os03g59320.1 LOC_Os03g59320 RbcX assembly factor involved in RuBisCo assembly 0.05 OrthoFinder output from all 47 species
Len_g00251 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Lfl_g05877 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Msp_g05315 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.02 OrthoFinder output from all 47 species
Ore_g16545 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.02 OrthoFinder output from all 47 species
Ppi_g00617 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Sam_g25402 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003435 Chaperonin_RcbX 79 180
No external refs found!