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  5. Zm00001e011649_P001

Zm00001e011649_P001 (Zm00001e011649)


Aliases : Zm00001e011649

Description : EF-Tu translation elongation factor


Gene families : OG0001305 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011649_P001
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00115820 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
AT4G02930 No alias GTP binding Elongation factor Tu family protein 0.17 OrthoFinder output from all 47 species
Adi_g112717 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Aev_g08675 No alias translation elongation factor *(EF-Tu) & original... 0.02 OrthoFinder output from all 47 species
Aop_g11193 No alias translation elongation factor *(EF-Tu) & original... 0.07 OrthoFinder output from all 47 species
Aspi01Gene58375.t1 Aspi01Gene58375 translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Cba_g05793 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.02 OrthoFinder output from all 47 species
Cba_g07152 No alias translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 47 species
Ceric.33G051100.1 Ceric.33G051100 translation elongation factor *(EF-Tu) & original... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.40 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Cre06.g259150 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Dac_g36457 No alias translation elongation factor *(EF-Tu) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g01379 No alias translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Ehy_g15550 No alias translation elongation factor *(EF-Tu) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01011073001 No alias Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
LOC_Os03g63410.1 LOC_Os03g63410 EF-Tu translation elongation factor 0.2 OrthoFinder output from all 47 species
Len_g01241 No alias translation elongation factor *(EF-Tu) & original... 0.06 OrthoFinder output from all 47 species
Lfl_g01476 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
MA_198162g0010 No alias EF-Tu translation elongation factor 0.04 OrthoFinder output from all 47 species
MA_58335g0010 No alias EF-Tu translation elongation factor 0.09 OrthoFinder output from all 47 species
Mp1g14750.1 No alias EF-Tu translation elongation factor 0.07 OrthoFinder output from all 47 species
Msp_g05693 No alias translation elongation factor *(EF-Tu) & original... 0.02 OrthoFinder output from all 47 species
Ore_g05800 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g07174 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g24393 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Sam_g09872 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Sam_g24887 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Smo153081 No alias Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Solyc06g008940.4.1 Solyc06g008940 EF-Tu translation elongation factor 0.1 OrthoFinder output from all 47 species
Solyc09g073000.3.1 Solyc09g073000 EF-Tu translation elongation factor 0.09 OrthoFinder output from all 47 species
Spa_g01140 No alias translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Tin_g06040 No alias translation elongation factor *(EF-Tu) & original... 0.06 OrthoFinder output from all 47 species
Zm00001e022880_P001 ATRAB8D,... EF-Tu translation elongation factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR004161 EFTu-like_2 279 350
IPR004160 Transl_elong_EFTu/EF1A_C 355 448
IPR000795 T_Tr_GTP-bd_dom 62 255
No external refs found!