Zm00001e011297_P001 (ATGCN5, GCN5, Zm00001e011297)

Aliases : ATGCN5, GCN5, Zm00001e011297

Description : ABC transporter F family member 5 OS=Arabidopsis thaliana (sp|q9lv93|ab5f_arath : 712.0)

Gene families : OG0003045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003045_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e011297_P001
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00247660	ATGCN5, GCN5,...	ABC transporter F family member 5 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT5G64840	ATGCN5, GCN5	general control non-repressible 5	0.12	OrthoFinder output from all 47 species
Adi_g057121	ATGCN5, GCN5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g12591	ATGCN5, GCN5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g04195	ATGCN5, GCN5	not classified & original description: none	0.1	OrthoFinder output from all 47 species
Als_g16234	ATGCN5, GCN5	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aob_g02291	ATGCN5, GCN5	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g07329	ATGCN5, GCN5	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene62480.t1	ATGCN5, GCN5,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0168.g054635	ATGCN5, GCN5	not classified & original description: CDS=239-2245	0.07	OrthoFinder output from all 47 species
Cba_g38272	ATGCN5, GCN5	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ceric.29G008900.1	ATGCN5, GCN5,...	not classified & original description: pacid=50624672...	0.15	OrthoFinder output from all 47 species
Cre06.g265100	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Cre06.g271850	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre08.g372250	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Dac_g12683	ATGCN5, GCN5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g28626	ATGCN5, GCN5	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Dde_g07651	ATGCN5, GCN5	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Ehy_g07834	ATGCN5, GCN5	not classified & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01022235001	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis thaliana	0.12	OrthoFinder output from all 47 species
Gb_01082	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis...	0.09	OrthoFinder output from all 47 species
Gb_01083	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os11g39020.1	ATGCN5, GCN5,...	ABC transporter F family member 5 OS=Arabidopsis...	0.2	OrthoFinder output from all 47 species
Len_g13114	ATGCN5, GCN5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g58557	ATGCN5, GCN5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g07903	ATGCN5, GCN5	not classified & original description: none	0.08	OrthoFinder output from all 47 species
MA_10437027g0010	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Mp7g11090.1	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis...	0.1	OrthoFinder output from all 47 species
Msp_g14610	ATGCN5, GCN5	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Nbi_g11528	ATGCN5, GCN5	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Ore_g30372	ATGCN5, GCN5	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g09728	ATGCN5, GCN5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g11340	ATGCN5, GCN5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g15434	ATGCN5, GCN5	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Sam_g19383	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Solyc04g051800.3.1	ATGCN5, GCN5,...	ABC transporter F family member 5 OS=Arabidopsis...	0.14	OrthoFinder output from all 47 species
Spa_g18685	ATGCN5, GCN5	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Tin_g11682	ATGCN5, GCN5	not classified & original description: none	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEP	HCCA
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032781	ABC_tran_Xtn	340	427
IPR003439	ABC_transporter-like_ATP-bd	454	585
IPR003439	ABC_transporter-like_ATP-bd	126	301

External Links

No external refs found!

Zm00001e011297_P001 (ATGCN5, GCN5, Zm00001e011297)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation