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  5. Zm00001e007203_P003

Zm00001e007203_P003 (ELF8, VIP6, Zm00001e007203)


Aliases : ELF8, VIP6, Zm00001e007203

Description : component VIP6/CTR9 of PAF1C transcription initiation and elongation complex


Gene families : OG0004869 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004869_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e007203_P003

Target Alias Description ECC score Gene Family Method Actions
Adi_g013906 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Als_g28871 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species
Aop_g37890 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Dac_g14157 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Ehy_g06197 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Gb_17412 ELF8, VIP6 component VIP6/CTR9 of PAF1C transcription initiation... 0.05 OrthoFinder output from all 47 species
LOC_Os07g29360.1 ELF8, VIP6,... component VIP6/CTR9 of PAF1C transcription initiation... 0.06 OrthoFinder output from all 47 species
Lfl_g02407 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Mp5g24200.1 ELF8, VIP6 component VIP6/CTR9 of PAF1C transcription initiation... 0.08 OrthoFinder output from all 47 species
Smo149863 ELF8, VIP6 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Solyc07g041550.2.1 Solyc07g041550 component VIP6/CTR9 of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013105 TPR_2 212 240
IPR019734 TPR_repeat 392 419
IPR019734 TPR_repeat 459 485
IPR019734 TPR_repeat 316 342
No external refs found!