Zm00001e006294_P001 (LOS1, Zm00001e006294)

Aliases : LOS1, Zm00001e006294

Description : mRNA-translocation factor (eEF2)

Gene families : OG0001393 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001393_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e006294_P001
Cluster	HCCA: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00032p00133570	LOS1,...	Protein biosynthesis.translation elongation.eEF2...	0.05	OrthoFinder output from all 47 species
AT1G56070	LOS1	Ribosomal protein S5/Elongation factor G/III/V family protein	0.09	OrthoFinder output from all 47 species
Aev_g06118	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14719	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g13248	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g70105	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene62102.t1	LOS1, Aspi01Gene62102	mRNA-translocation factor *(eEF2)) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g02688	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g22337	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g58957	LOS1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.25G007600.1	LOS1, Ceric.25G007600	mRNA-translocation factor *(eEF2)) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021464.39	LOS1	Protein biosynthesis.translation elongation.eEF2...	0.03	OrthoFinder output from all 47 species
Cre12.g516200	LOS1	Protein biosynthesis.translation elongation.eEF2...	0.08	OrthoFinder output from all 47 species
Dac_g16205	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g19221	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01020404001	LOS1	Elongation factor 2 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_14897	LOS1	mRNA-translocation factor (eEF2)	0.05	OrthoFinder output from all 47 species
LOC_Os02g32030.1	LOS1, LOC_Os02g32030	mRNA-translocation factor (eEF2)	0.04	OrthoFinder output from all 47 species
LOC_Os04g02820.1	LOS1, LOC_Os04g02820	mRNA-translocation factor (eEF2)	0.06	OrthoFinder output from all 47 species
Len_g59388	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g06654	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g23642	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.03	OrthoFinder output from all 47 species
MA_10426758g0020	LOS1	Elongation factor 2 OS=Beta vulgaris...	0.02	OrthoFinder output from all 47 species
Mp2g20190.1	LOS1	mRNA-translocation factor (eEF2)	0.17	OrthoFinder output from all 47 species
Mp2g20200.1	LOS1	mRNA-translocation factor (eEF2)	0.17	OrthoFinder output from all 47 species
Msp_g08640	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c11_25350V3.1	LOS1, Pp3c11_25350	Ribosomal protein S5/Elongation factor G/III/V family protein	0.01	OrthoFinder output from all 47 species
Pp3c7_1950V3.1	LOS1, Pp3c7_1950	Ribosomal protein S5/Elongation factor G/III/V family protein	0.02	OrthoFinder output from all 47 species
Sam_g38282	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g49446	No alias	mRNA-translocation factor *(eEF2)) & original description: none	0.04	OrthoFinder output from all 47 species
Solyc08g062910.4.1	LOS1, Solyc08g062910	mRNA-translocation factor (eEF2)	0.06	OrthoFinder output from all 47 species
Solyc08g062920.3.1	LOS1, Solyc08g062920	mRNA-translocation factor (eEF2)	0.11	OrthoFinder output from all 47 species
Spa_g06405	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g06406	LOS1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g26568	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g30071	LOS1	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Spa_g56829	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g21523	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041095	EFG_II	487	549
IPR000640	EFG_V-like	724	811
IPR005517	Transl_elong_EFG/EF2_IV	611	722
IPR004161	EFTu-like_2	394	467
IPR000795	T_Tr_GTP-bd_dom	18	342

External Links

No external refs found!

Zm00001e006294_P001 (LOS1, Zm00001e006294)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation