1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e000458_P001

Zm00001e000458_P001 (Zm00001e000458)


Aliases : Zm00001e000458

Description : nMAT1/2 type-I mitochondrial RNA splicing factor


Gene families : OG0003627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003627_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e000458_P001
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00133480 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
AMTR_s00110p00142760 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Adi_g021888 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.02 OrthoFinder output from all 47 species
Als_g06394 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20844 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.02 OrthoFinder output from all 47 species
Ceric.09G034500.1 Ceric.09G034500 not classified & original description: pacid=50588493... 0.02 OrthoFinder output from all 47 species
Dcu_g01811 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.04 OrthoFinder output from all 47 species
Dcu_g03916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g12856 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.02 OrthoFinder output from all 47 species
Ehy_g01601 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.03 OrthoFinder output from all 47 species
GSVIVT01023127001 No alias RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
LOC_Os10g41790.1 LOC_Os10g41790 nMAT1/2 type-I mitochondrial RNA splicing factor 0.09 OrthoFinder output from all 47 species
Len_g09777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_52319g0030 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Pir_g17879 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.03 OrthoFinder output from all 47 species
Ppi_g05248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g112025.1.1 Solyc01g112025 nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Solyc08g077385.1.1 Solyc08g077385 nMAT1/2 type-I mitochondrial RNA splicing factor 0.05 OrthoFinder output from all 47 species
Spa_g06703 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13211 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004526 ribonuclease P activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR024937 Domain_X 498 592
No external refs found!